Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g014210.2.1 | Tomato | nucleus | 96.65 | 96.59 |
| PGSC0003DMT400041647 | Potato | cytosol | 15.85 | 74.66 |
| PGSC0003DMT400041805 | Potato | nucleus | 68.71 | 73.24 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 41.93 | 58.85 |
| KRG97543 | Soybean | nucleus, plastid | 57.49 | 57.49 |
| KRH31333 | Soybean | nucleus, plastid | 57.2 | 56.97 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 54.66 | 54.4 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 40.02 | 53.77 |
| OQU90279 | Sorghum | nucleus | 46.91 | 53.46 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 40.14 | 52.46 |
| Bra006057.1-P | Field mustard | plastid | 52.63 | 51.85 |
| CDX78376 | Canola | plastid | 52.57 | 51.74 |
| CDX81170 | Canola | plastid | 52.63 | 51.62 |
| AT5G10370.1 | Thale cress | nucleus | 52.92 | 51.55 |
| AT4G01020.1 | Thale cress | nucleus | 52.75 | 51.04 |
| CDX69841 | Canola | plastid | 51.3 | 50.2 |
| Bra009038.1-P | Field mustard | plastid | 51.24 | 50.14 |
| CDX96996 | Canola | nucleus | 51.13 | 49.97 |
| Zm00001d022176_P002 | Maize | nucleus | 49.68 | 49.03 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 48.93 | 48.79 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 49.16 | 48.68 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 47.08 | 48.6 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 47.02 | 48.39 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 36.84 | 47.64 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 44.71 | 47.54 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 48.12 | 47.43 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 46.85 | 47.42 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 49.05 | 46.83 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 48.7 | 46.14 |
| PGSC0003DMT400038620 | Potato | cytosol, nucleus, plastid | 8.39 | 41.55 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 7.17 | 32.89 |
| PGSC0003DMT400046188 | Potato | nucleus | 13.01 | 32.61 |
| PGSC0003DMT400084916 | Potato | nucleus | 14.05 | 30.34 |
| PGSC0003DMT400023284 | Potato | nucleus | 12.43 | 29.74 |
| PGSC0003DMT400005723 | Potato | nucleus | 13.07 | 27.49 |
| PGSC0003DMT400039875 | Potato | nucleus | 14.23 | 26.65 |
| PGSC0003DMT400055058 | Potato | nucleus | 11.34 | 22.95 |
| PGSC0003DMT400063370 | Potato | nucleus | 13.82 | 22.76 |
| PGSC0003DMT400056692 | Potato | nucleus | 14.4 | 21.82 |
| PGSC0003DMT400055091 | Potato | mitochondrion | 13.13 | 19.5 |
| PGSC0003DMT400018531 | Potato | nucleus | 14.23 | 19.14 |
| PGSC0003DMT400000297 | Potato | nucleus | 13.36 | 17.29 |
| PGSC0003DMT400063366 | Potato | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | EntrezGene:102589433 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | GO:GO:0046872 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IBR_dom |
| InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR013087 | InterPro:IPR014001 | UniProt:M1C6E1 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01485 | PFAM:PF04408 | PFAM:PF07717 |
| EnsemblPlantsGene:PGSC0003DMG400023635 | PGSC:PGSC0003DMG400023635 | EnsemblPlants:PGSC0003DMT400060759 | ScanProsite:PS00028 | ScanProsite:PS00518 | ScanProsite:PS00690 |
| PFscan:PS50089 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00647 | SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF57850 | UniParc:UPI000295E0FF |
| RefSeq:XP_006346743.1 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg |
Description
ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400023635]
Coordinates
chr4:+:8128216..8136477
Molecular Weight (calculated)
194547.0 Da
IEP (calculated)
7.236
GRAVY (calculated)
-0.194
Length
1729 amino acids
Sequence
(BLAST)
(BLAST)
0001: MHDSSSCNRQ VPAPAMYHEH SYRLSNNRPC RPGYYSSSYE LDRPPGHSHK SPNFVIQLRS GNRRINRYAL DDLIEKLPFA PRSSFVFSKG FLSGSLMYDQ
0101: WSETLEVIVK LWRMRLSGSH SFTPWVKRNV EVPSDEDELK ARVKMVFLEE LKGLLVEGEL LQKWEKKLEL LRDEICELSR LLKNRNNLRV CNEFLKKREG
0201: LEKESDLIRK RIQEFKRGIE CIIQQLEETS LKEEEGGSRV FKIGTVFDWS KIHCLMMREC RRLDDGLPIF AFRQQILRQI HYQQVTVLIG ETGSGKSTQL
0301: VQFLADCGVT GNGSIVCTQP RKLAANSLAQ RVKQESEGCY EDTSIICYPS YSSGHKFDSK VVFMTDHCLL QHYMVDKNLS KISCIIVDEA HERSLDTDLL
0401: LALIKNLLLQ RLDLRLVIMS ATADAAQLAD YFFGCGTFQV AGRTFPVDVE YVPCESTGCL GVGPISSYVY DVVKMVTEIH ETEGEGTILA FLTSQIEVEW
0501: ACEKFQTLSA ISLPLHGKLS YEEQHRVFLS YPGKRKVIFT TNVAETSLTI PGVKYVVDSG MVKESRFEPG TCMSILRICN VSQSSAKQRA GRAGRTGPGR
0601: CYRLYSESDF EGMSHHQEPE IRKVHLGVAV LRILALGIKN VHDFDFVDAP SPKAIEMATR NLVQLGAVWK KDDAYELTIE GHKIIKLGIE PRLGKLILSC
0701: FNQHLSREGV VLAAVMASSS SIFCRVGSEG DKLKSDCLKV QFCHPNGDLF TLLSVYKEWE AVPKEGKNAW CWDNSINAKS MRRCQETVQE LEACLKSELN
0801: IIVASYWRWD PQMHTEHDET LKRIILSSLA ENVAMYSGYD QLGYEVALSE KYIQLHPSCS LLNFDRRPTW VVFGEILSAA NEYLVCVTAF EFSSLSALSP
0901: SPLFNFLEMD AQKLEKKVLT GFGSMLLKRF CGKSNSSVNN LVSRIRTKYM DERIGIQVNV GKNEVLLYAS SSDMESVLGQ VNDALEYESK LLQNECLEKC
1001: LFSGGLAASA SVALFGAGAI VKHLELKKRI LAVDIFHSNT KAVDDKELLM FLERNTSGDI CAVHKSSGTG HDNEENRWGR VTFLSPDAAK QAMLLNQVEC
1101: SGGFLKVVPS RSVFCNDQKQ FSSVLRTRVN WPRRCCNGVA IVKCEPNDVG FMVKDFSVVM IGGNTIRSKP SNKYSDSIVI SGLNTDHSET EVLEVLSGVT
1201: DGKILDFFFV RGSAVENPPV AACEEALRRE ISPFMPKNVQ SIRVQVFQPE PKDTYMRASI MFDGSFHLEA AKALEHIDGK VLSGCLPWQK IRCQQQFHSS
1301: VSCPAPVYHV IRNQLDSLLL CLQRRNGVEC NLERNENGSY RVKISASATK IVAELRRPLE QLMKGKIVDH VGISLTVVQL LFSREGNNIM KMVQQETGTY
1401: ILFDRHSLSV RIFGSSDKIE MAERKFVNSL LALHESKQLE VHLRGGLLPL DLMKRVVQSF GPDLSGLKLK VPNAEFSLNT KRHCISIKGT KDMKQKVEEI
1501: ISEIAQSGLP SKMMDDETDC PICLCELEDA YRLEGCTHTF CRSCLLEQCE SATRSREGFP LCCMHKGCGA HILVSDLRSL LSSDKLEELF RASLGAFVAA
1601: SVGRYRFCPS PDCPSVYHVT ESGEVGAPFV CGACYVETCT SCHLEYHPYI SCEKYKEFKD NPDFSLEEWA KGKENVKKCP VCGFTIEKVD GCNHIECKCG
1701: KHVCWVCLVF FSSSDDCYNH LRSLHQAIM
0101: WSETLEVIVK LWRMRLSGSH SFTPWVKRNV EVPSDEDELK ARVKMVFLEE LKGLLVEGEL LQKWEKKLEL LRDEICELSR LLKNRNNLRV CNEFLKKREG
0201: LEKESDLIRK RIQEFKRGIE CIIQQLEETS LKEEEGGSRV FKIGTVFDWS KIHCLMMREC RRLDDGLPIF AFRQQILRQI HYQQVTVLIG ETGSGKSTQL
0301: VQFLADCGVT GNGSIVCTQP RKLAANSLAQ RVKQESEGCY EDTSIICYPS YSSGHKFDSK VVFMTDHCLL QHYMVDKNLS KISCIIVDEA HERSLDTDLL
0401: LALIKNLLLQ RLDLRLVIMS ATADAAQLAD YFFGCGTFQV AGRTFPVDVE YVPCESTGCL GVGPISSYVY DVVKMVTEIH ETEGEGTILA FLTSQIEVEW
0501: ACEKFQTLSA ISLPLHGKLS YEEQHRVFLS YPGKRKVIFT TNVAETSLTI PGVKYVVDSG MVKESRFEPG TCMSILRICN VSQSSAKQRA GRAGRTGPGR
0601: CYRLYSESDF EGMSHHQEPE IRKVHLGVAV LRILALGIKN VHDFDFVDAP SPKAIEMATR NLVQLGAVWK KDDAYELTIE GHKIIKLGIE PRLGKLILSC
0701: FNQHLSREGV VLAAVMASSS SIFCRVGSEG DKLKSDCLKV QFCHPNGDLF TLLSVYKEWE AVPKEGKNAW CWDNSINAKS MRRCQETVQE LEACLKSELN
0801: IIVASYWRWD PQMHTEHDET LKRIILSSLA ENVAMYSGYD QLGYEVALSE KYIQLHPSCS LLNFDRRPTW VVFGEILSAA NEYLVCVTAF EFSSLSALSP
0901: SPLFNFLEMD AQKLEKKVLT GFGSMLLKRF CGKSNSSVNN LVSRIRTKYM DERIGIQVNV GKNEVLLYAS SSDMESVLGQ VNDALEYESK LLQNECLEKC
1001: LFSGGLAASA SVALFGAGAI VKHLELKKRI LAVDIFHSNT KAVDDKELLM FLERNTSGDI CAVHKSSGTG HDNEENRWGR VTFLSPDAAK QAMLLNQVEC
1101: SGGFLKVVPS RSVFCNDQKQ FSSVLRTRVN WPRRCCNGVA IVKCEPNDVG FMVKDFSVVM IGGNTIRSKP SNKYSDSIVI SGLNTDHSET EVLEVLSGVT
1201: DGKILDFFFV RGSAVENPPV AACEEALRRE ISPFMPKNVQ SIRVQVFQPE PKDTYMRASI MFDGSFHLEA AKALEHIDGK VLSGCLPWQK IRCQQQFHSS
1301: VSCPAPVYHV IRNQLDSLLL CLQRRNGVEC NLERNENGSY RVKISASATK IVAELRRPLE QLMKGKIVDH VGISLTVVQL LFSREGNNIM KMVQQETGTY
1401: ILFDRHSLSV RIFGSSDKIE MAERKFVNSL LALHESKQLE VHLRGGLLPL DLMKRVVQSF GPDLSGLKLK VPNAEFSLNT KRHCISIKGT KDMKQKVEEI
1501: ISEIAQSGLP SKMMDDETDC PICLCELEDA YRLEGCTHTF CRSCLLEQCE SATRSREGFP LCCMHKGCGA HILVSDLRSL LSSDKLEELF RASLGAFVAA
1601: SVGRYRFCPS PDCPSVYHVT ESGEVGAPFV CGACYVETCT SCHLEYHPYI SCEKYKEFKD NPDFSLEEWA KGKENVKKCP VCGFTIEKVD GCNHIECKCG
1701: KHVCWVCLVF FSSSDDCYNH LRSLHQAIM
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Arabidopsis Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.