Factsheet for PGSC0003DMT400046188

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g097820.2.1	Tomato	nucleus	98.84	98.41
VIT_10s0003g00810.t01	Wine grape	nucleus	82.32	81.84
KRH21325	Soybean	nucleus	76.09	78.83
Bra013313.1-P	Field mustard	nucleus	77.54	76.76
CDX78859	Canola	nucleus	77.39	76.5
CDX99466	Canola	nucleus	77.39	76.29
AT4G18465.1	Thale cress	nucleus	76.67	76.12
OQU86123	Sorghum	nucleus	75.36	74.29
TraesCS3D01G148100.1	Wheat	nucleus	75.36	74.18
TraesCS3B01G165500.1	Wheat	nucleus	75.22	74.04
TraesCS3A01G131800.1	Wheat	nucleus	75.22	74.04
GSMUA_Achr11P...	Banana	nucleus	40.58	73.88
Os01t0212100-01	Rice	nucleus	74.64	73.57
HORVU3Hr1G028550.17	Barley	cytosol	70.72	70.01
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	25.36	50.14
Zm00001d039380_P001	Maize	nucleus	64.06	46.67
PGSC0003DMT400023284	Potato	nucleus	45.07	43.02
PGSC0003DMT400009842	Potato	mitochondrion	22.75	41.64
PGSC0003DMT400084916	Potato	nucleus	46.38	39.95
PGSC0003DMT400005723	Potato	nucleus	46.52	39.05
PGSC0003DMT400063370	Potato	nucleus	46.09	30.29
PGSC0003DMT400039875	Potato	nucleus	39.28	29.36
PGSC0003DMT400056692	Potato	nucleus	45.51	27.52
PGSC0003DMT400055058	Potato	nucleus	30.29	24.47
PGSC0003DMT400018531	Potato	nucleus	41.16	22.1
PGSC0003DMT400055091	Potato	mitochondrion	28.41	16.84
PGSC0003DMT400000297	Potato	nucleus	31.45	16.24
PGSC0003DMT400041805	Potato	nucleus	32.75	13.93
PGSC0003DMT400060759	Potato	nucleus	32.61	13.01
PGSC0003DMT400041647	Potato	cytosol	0.0	0.0
PGSC0003DMT400063366	Potato	plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:102597582	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0009506	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	UniProt:M1BIR6	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
EnsemblPlantsGene:PGSC0003DMG402017925	PGSC:PGSC0003DMG402017925	EnsemblPlants:PGSC0003DMT400046188	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF136	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
UniParc:UPI0002959362	RefSeq:XP_006358785.1	RefSeq:XP_015169622.1	SEG:seg	:	:

Description

ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG402017925]

Coordinates

chr9:-:60253150..60266857

Molecular Weight (calculated)

77233.9 Da

IEP (calculated)

7.564

GRAVY (calculated)

-0.181

Length

690 amino acids

Sequence
(BLAST)

001: MSQFWKPGTE RPRLVDDEEG GILLYTASSS SSSGFGYGSL EKQRQRLPVY KYKTAILYSV ETHATTIIVG ETGSGKTTQI PQYLKEAGWA EGGRMIACTQ
101: PRRLAVQAVA TRVAEEMDVK LGEEVGYTIR FEDITNEELT RVKFLTDGVL LREMMDDPLL SKYSVIMVDE AHERSLSTDI LLGLLKKIQR RRPELRIIIS
201: SATIEAKSMA AFFNTRRRRE EEQGPTKEPA ILSVEGRGFN VEIFYVDDPV SDYVRSAVST VMSIHDQERM GDILVFLTGQ DDIDTAIQLL TEEAQSSGKQ
301: GLVSVPLYSG LPRADQDLVF SPTPRGKRKV IFSTNIAETS LTLEGIVYVV DSGFSKQRFY NPISDIENLV VAPISKASAR QRAGRAGRVR PGKCFRLYTE
401: DYFSNEMSVV GIPEIQRSNL VSCVIQLKAL GIDNILGFDW PASPSPESMI RALEVLYSLG VLDDDAKLTS PTGFQVAEIP LDPLISKMIL ASCEFGCSEE
501: IITIAAVLSI QSIWIPVRGV QKQLDEAKLR FAAAEGDHVT FLNVYKGFIQ SNKSSKWCHK NFINYHAMRK VIEVREQLKR ITQRLGIGLK SCEGDIQAVK
601: KAITAGFFAN AARLEPFSHN GMYKTLRTSQ EVYIHPSSVL FRVNPKFIVY HSLVSTDRQY MRNVITIDPS WLTEAAPHFY QKQLHSSIPQ

Best Arabidopsis Sequence Match ( AT4G18465.1 )
(BLAST)

001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.