Factsheet for AT4G18465.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013313.1-P	Field mustard	nucleus	94.39	94.12
CDX99466	Canola	nucleus	94.24	93.57
CDX78859	Canola	nucleus	93.67	93.27
VIT_10s0003g00810.t01	Wine grape	nucleus	77.27	77.38
PGSC0003DMT400046188	Potato	nucleus	76.12	76.67
KRH21325	Soybean	nucleus	73.24	76.43
Solyc09g097820.2.1	Tomato	nucleus	75.54	75.76
OQU86123	Sorghum	nucleus	75.68	75.14
Os01t0212100-01	Rice	nucleus	74.68	74.14
TraesCS3D01G148100.1	Wheat	nucleus	74.24	73.61
TraesCS3B01G165500.1	Wheat	nucleus	74.1	73.47
TraesCS3A01G131800.1	Wheat	nucleus	73.96	73.32
GSMUA_Achr11P...	Banana	nucleus	38.7	70.98
HORVU3Hr1G028550.17	Barley	cytosol	70.07	69.87
Zm00001d039380_P001	Maize	nucleus	64.46	47.31
AT3G62310.1	Thale cress	nucleus	44.46	42.56
AT2G47250.1	Thale cress	nucleus	43.88	41.84
AT1G26370.1	Thale cress	plastid	41.44	40.17
AT4G16680.2	Thale cress	nucleus	43.45	37.94
AT5G14900.1	Thale cress	cytosol	16.12	37.21
AT1G27900.1	Thale cress	nucleus	36.4	36.14
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	45.18	30.08
AT1G32490.1	Thale cress	cytosol	44.89	29.89
AT3G26560.1	Thale cress	nucleus	43.88	26.11
AT5G13010.1	Thale cress	nucleus	40.86	22.63
AT2G35920.3	Thale cress	plastid	31.8	21.52
AT2G01130.1	Thale cress	nucleus	29.93	18.69
AT1G48650.2	Thale cress	nucleus, plastid	30.94	17.83
AT1G33390.2	Thale cress	nucleus	31.37	17.62
AT5G04895.1	Thale cress	mitochondrion	28.78	17.23
AT1G58050.1	Thale cress	nucleus	30.07	14.75
AT1G58060.1	Thale cress	nucleus	30.79	14.67
AT2G30800.1	Thale cress	nucleus	26.76	14.32
AT5G10370.1	Thale cress	nucleus	32.95	12.9
AT4G01020.1	Thale cress	nucleus	32.81	12.76
AT1G06670.1	Thale cress	nucleus	26.33	11.61

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:827579	UniProt:A0A178V3Z3	ProteinID:AEE84050.1
ArrayExpress:AT4G18465	EnsemblPlantsGene:AT4G18465	RefSeq:AT4G18465	TAIR:AT4G18465	RefSeq:AT4G18465-TAIR-G	EnsemblPlants:AT4G18465.1
TAIR:AT4G18465.1	ProteinID:CAA16726.1	ProteinID:CAB78848.1	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	UniProt:F4JRJ6
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006396
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009506	GO:GO:0009987
GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
RefSeq:NP_567558.2	ProteinID:OAP00441.1	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF136	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0001E92EF9	SEG:seg	:

Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]

Coordinates

chr4:+:10196954..10201787

Molecular Weight (calculated)

77719.5 Da

IEP (calculated)

8.100

GRAVY (calculated)

-0.224

Length

695 amino acids

Sequence
(BLAST)

001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.