Factsheet for AT5G04895.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009414.1-P	Field mustard	mitochondrion	93.8	94.29
CDX98799	Canola	mitochondrion	93.71	94.28
CDX70187	Canola	mitochondrion	93.63	94.03
KRH44757	Soybean	plastid	79.76	79.76
Solyc01g006710.2.1	Tomato	mitochondrion	78.21	78.01
PGSC0003DMT400055091	Potato	mitochondrion	78.04	77.84
Os03t0748800-01	Rice	mitochondrion	76.49	77.22
KXG37551	Sorghum	nucleus, vacuole	76.06	76.65
GSMUA_Achr4P07530_001	Banana	mitochondrion	76.83	76.57
TraesCS5B01G392800.1	Wheat	nucleus	75.45	76.17
TraesCS5D01G397600.1	Wheat	nucleus	75.45	76.17
TraesCS5A01G387700.2	Wheat	golgi, nucleus	75.45	75.84
HORVU5Hr1G094990.5	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	74.94	75.65
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	75.97	73.56
AT2G01130.1	Thale cress	nucleus	55.12	57.5
AT1G48650.2	Thale cress	nucleus, plastid	58.83	56.63
AT2G35920.3	Thale cress	plastid	40.57	45.86
AT2G47250.1	Thale cress	nucleus	19.72	31.41
AT3G62310.1	Thale cress	nucleus	19.47	31.13
AT1G27900.1	Thale cress	nucleus	17.74	29.43
AT4G18465.1	Thale cress	nucleus	17.23	28.78
AT4G16680.2	Thale cress	nucleus	19.38	28.27
AT1G26370.1	Thale cress	plastid	16.37	26.5
AT2G30800.1	Thale cress	nucleus	27.65	24.71
AT5G14900.1	Thale cress	cytosol	6.37	24.58
AT1G58060.1	Thale cress	nucleus	30.58	24.33
AT1G58050.1	Thale cress	nucleus	28.25	23.15
AT1G32490.1	Thale cress	cytosol	20.07	22.32
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	19.9	22.13
AT3G26560.1	Thale cress	nucleus	21.79	21.66
AT5G13010.1	Thale cress	nucleus	21.79	20.16
AT1G06670.1	Thale cress	nucleus	26.1	19.23
AT1G33390.2	Thale cress	nucleus	19.04	17.87
AT5G10370.1	Thale cress	nucleus	22.05	14.42
AT4G01020.1	Thale cress	nucleus	22.05	14.33

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:830371	ProteinID:AED90801.1
ArrayExpress:AT5G04895	EnsemblPlantsGene:AT5G04895	RefSeq:AT5G04895	TAIR:AT5G04895	RefSeq:AT5G04895-TAIR-G	EnsemblPlants:AT5G04895.1
TAIR:AT5G04895.1	Unigene:At.45659	ProteinID:BAB11511.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014720
RefSeq:NP_680142.2	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	PO:PO:0000293	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF103
UniProt:Q9FF84	SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
SUPFAM:SSF54768	UniParc:UPI00000A5E63	InterPro:dsRBD_dom	SEG:seg	:	:

Description

ATP-dependent RNA helicase A-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF84]

Coordinates

chr5:+:1428597..1434769

Molecular Weight (calculated)

130839.0 Da

IEP (calculated)

8.484

GRAVY (calculated)

-0.353

Length

1161 amino acids

Sequence
(BLAST)

0001: MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.