Factsheet for Solyc01g006710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055091	Potato	mitochondrion	97.77	97.77
KRH44757	Soybean	plastid	81.44	81.65
Bra009414.1-P	Field mustard	mitochondrion	77.75	78.36
GSMUA_Achr4P07530_001	Banana	mitochondrion	78.35	78.28
CDX98799	Canola	mitochondrion	77.58	78.25
AT5G04895.1	Thale cress	mitochondrion	78.01	78.21
CDX70187	Canola	mitochondrion	77.66	78.2
Os03t0748800-01	Rice	mitochondrion	76.2	77.13
KXG37551	Sorghum	nucleus, vacuole	75.69	76.48
TraesCS5D01G397600.1	Wheat	nucleus	75.43	76.35
TraesCS5B01G392800.1	Wheat	nucleus	75.43	76.35
TraesCS5A01G387700.2	Wheat	golgi, nucleus	75.43	76.02
HORVU5Hr1G094990.5	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	75.0	75.91
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	75.34	73.14
Solyc04g007510.2.1	Tomato	plastid	58.42	58.93
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	60.74	58.87
Solyc01g006970.2.1	Tomato	nucleus	40.29	45.49
Solyc01g079250.2.1	Tomato	nucleus	19.93	32.09
Solyc09g008120.2.1	Tomato	nucleus	18.04	29.54
Solyc07g044930.2.1	Tomato	nucleus	29.21	28.36
Solyc05g015040.2.1	Tomato	nucleus	17.01	28.29
Solyc09g097820.2.1	Tomato	nucleus	16.84	28.28
Solyc12g089010.1.1	Tomato	nucleus	19.16	27.53
Solyc03g115390.2.1	Tomato	nucleus	20.96	26.84
Solyc12g017700.1.1	Tomato	nucleus	19.59	25.73
Solyc01g103690.2.1	Tomato	nucleus	31.44	25.45
Solyc01g110990.2.1	Tomato	nucleus	22.42	23.49
Solyc07g039550.2.1	Tomato	nucleus	22.59	22.1
Solyc10g076910.1.1	Tomato	nucleus	21.99	19.92
Solyc01g095710.2.1	Tomato	nucleus	20.02	17.38
Solyc11g010310.1.1	Tomato	nucleus	20.88	14.25
Solyc04g014210.2.1	Tomato	nucleus	19.5	13.12

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014720	UniProt:K4ASN7	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF103
SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF54768
EnsemblPlantsGene:Solyc01g006710.2	EnsemblPlants:Solyc01g006710.2.1	UniParc:UPI00027624C8	InterPro:dsRBD_dom	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:1286242..1300706

Molecular Weight (calculated)

131555.0 Da

IEP (calculated)

8.532

GRAVY (calculated)

-0.339

Length

1164 amino acids

Sequence
(BLAST)

0001: MHSRVGFLLA CTKRRSSSST FLLSTVFSSH QNRKIFVACH RRILIGSDIS KIYFFEESNF RGLGQLRGFC RYPGIAALEQ FSDDEYECDY ENHPASSSVA
0101: NVDEWKWKLS LLLRNEKDHE IVSRDKRDRR DYEQISNLAK RMGLYSEIYG KVVVVSKVPL PNYRPDLDDK RPQREVVIPL SLQRRVEGLL QEHIDRTQLS
0201: SGKDDNILDG TKSSDIVTDA NMDENPDSFL DGSVMEKVLQ RRSLRMRNMQ RGWQESPDGN KMLEFRKSLP AFKEKERLLQ AIARNQVVVI SGETGCGKTT
0301: QLPQYILESE IESGRGAFCS IICTQPRRIS ALAVAERVAT ERGEPLGDSV GYKVRLEGVK GKNTHLLFCT SGILLRRLLS DRNLDGITHV FVDEIHERGM
0401: NEDFLLIVLK DLLPRRPDLR LILMSATLNA ELFSSYFGGA PMIHIPGFTY PVRANFLEDV LEITGYKLTS FNQIDDYGQE KMWKTQKQLA PRKKKNQITA
0501: LVEDAVEKSN FENYSPRARD SLACWAPDCI GFNLIEAVLC HICRKERPGA VLVFMTGWED ISCLRDQLKA HPLLGDPNRV LVLTCHGSMA TSEQKLIFEK
0601: PPQNVRKIVL ATNMAEASIT INDVVFVVDC GKAKETTYDA LNNTPCLLPS WISQASARQR RGRAGRVQPG ECYHLYPRCV YEAFAEYQLP ELLRTPLNSL
0701: CLQIKSLQVG SIAGFLSSAL QPPESLAVQN AIQFLKMIGA LDENENLTHL GKFLAILPVD PKLGKMLIMG TIFRCFDPVL TIVAGLSVRD PFLLPQDKKD
0801: LAGTAKSRFS AKDYSDHMAL VRAYEGWKDA EREGSAYEYC WRNFLSAQTL QAIHSLRKQF IFILKDAGLL DADTATNNKL SYNQSLVRAV ICSGLYPGIS
0901: SVVNRETSMS FKTMDDGQVF LYTNSVNARY QTIPYPWLVF SEKVKVNTVF IRDSTGVSDS IVILFGSTLD CGDVAGHLKM LGGYIEFFMD PSLADCYIKL
1001: KEELDILLQK KLQDPEVDIH KEGKYLMLAV QELVSGDQSE GRFVFGRENK KPKDSDADRF TRDGTNPKSL LQTLLMRAGH SPPKYKTKHL KTNEFRALAE
1101: FKGMQFVGKP KRNKALAEKD AAIEALAWLT QTSDKNHGED DKSPPDVTDN MLKLLGKRRR SKRR

Best Arabidopsis Sequence Match ( AT5G04895.1 )
(BLAST)

0001: MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K

Arabidopsis Description

ATP-dependent RNA helicase A-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF84]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.