Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400084916 | Potato | nucleus | 71.56 | 99.25 |
| Os02t0301500-01 | Rice | nucleus | 45.54 | 92.67 |
| CDY51663 | Canola | nucleus | 5.13 | 90.48 |
| CDX91491 | Canola | nucleus | 5.04 | 88.89 |
| CDY23338 | Canola | cytosol | 33.21 | 87.44 |
| Solyc07g039550.2.1 | Tomato | nucleus | 93.16 | 86.97 |
| VIT_08s0056g00470.t01 | Wine grape | nucleus | 85.15 | 80.51 |
| CDX83624 | Canola | nucleus | 79.03 | 78.74 |
| KRH05918 | Soybean | nucleus | 84.43 | 78.36 |
| CDY13640 | Canola | nucleus | 79.3 | 78.31 |
| GSMUA_Achr10P... | Banana | nucleus | 68.5 | 78.05 |
| KRH17401 | Soybean | nucleus | 84.43 | 77.97 |
| AT3G26560.1 | Thale cress | nucleus | 81.46 | 77.48 |
| KRG97372 | Soybean | nucleus | 67.06 | 77.04 |
| Bra025211.1-P | Field mustard | nucleus | 80.65 | 76.52 |
| Bra040091.1-P | Field mustard | nucleus | 52.66 | 73.96 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 81.28 | 73.18 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 81.1 | 73.01 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 81.01 | 72.46 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 80.38 | 72.25 |
| EER95349 | Sorghum | nucleus | 80.74 | 72.22 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 81.37 | 70.13 |
| Os06t0343100-01 | Rice | nucleus | 67.42 | 69.1 |
| EES15324 | Sorghum | nucleus | 66.61 | 69.09 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 65.08 | 67.19 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 65.26 | 67.01 |
| Zm00001d031581_P002 | Maize | nucleus | 65.89 | 55.29 |
| Solyc01g079250.2.1 | Tomato | nucleus | 32.04 | 49.24 |
| Solyc09g097820.2.1 | Tomato | nucleus | 29.07 | 46.61 |
| Solyc12g089010.1.1 | Tomato | nucleus | 33.48 | 45.93 |
| Solyc03g115390.2.1 | Tomato | nucleus | 36.72 | 44.88 |
| Solyc09g008120.2.1 | Tomato | nucleus | 28.26 | 44.16 |
| Solyc12g017700.1.1 | Tomato | nucleus | 34.29 | 43.0 |
| Solyc05g015040.2.1 | Tomato | nucleus | 26.64 | 42.29 |
| Solyc10g076910.1.1 | Tomato | nucleus | 37.71 | 32.61 |
| Solyc01g006970.2.1 | Tomato | nucleus | 24.57 | 26.48 |
| Solyc01g006710.2.1 | Tomato | mitochondrion | 23.49 | 22.42 |
| Solyc04g007510.2.1 | Tomato | plastid | 22.5 | 21.66 |
| Solyc03g118920.2.1 | Tomato | mitochondrion, nucleus | 22.95 | 21.23 |
| Solyc01g095710.2.1 | Tomato | nucleus | 23.22 | 19.24 |
| Solyc07g044930.2.1 | Tomato | nucleus | 20.25 | 18.77 |
| Solyc01g103690.2.1 | Tomato | nucleus | 21.87 | 16.9 |
| Solyc04g014210.2.1 | Tomato | nucleus | 23.4 | 15.03 |
| Solyc11g010310.1.1 | Tomato | nucleus | 22.86 | 14.9 |
Protein Annotations
| Gene3D:2.40.50.140 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS |
| InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR003029 | InterPro:IPR014001 | UniProt:K4B3W2 | InterPro:NA-bd_OB-fold |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00575 | PFAM:PF04408 | PFAM:PF07717 |
| ScanProsite:PS00690 | PFscan:PS50126 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF120 |
| InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF50249 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc01g110990.2 | EnsemblPlants:Solyc01g110990.2.1 | UniParc:UPI0002769184 | SEG:seg |
Description
No Description!
Coordinates
chr1:+:97415185..97418863
Molecular Weight (calculated)
126676.0 Da
IEP (calculated)
7.373
GRAVY (calculated)
-0.645
Length
1111 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPDYFVRTLL TIIHAILPPS AKSKSEKESN KDGNDSEFSA LKIRDNRDRV KELEKEIELE ARSKRRDEKG EERDRRREGD RDYRRERGRD RRDRDRGRDR
0101: DRDDGRVERR ASERRRDRDG DGDVYAKGSR DDYEQDGDDD RRDRRKSRHH VDEPELYAVY KGRVSRVMDS GCFVQLNEFR GKEGLVHVSQ LATRRVSNAK
0201: DLVKRDQDVF VKVISISGQK LSLSMRDVDQ NTGKDLLPLK KSSDGGGLTT NPSGMNNEGS KTGIGLSGIR IAEQEDVVPS RRPVKRMSSP EKWEAKQLIA
0301: AGVLGVHEHP MFDEEGDGML YQEEDGVDEE LEVELNEDEP PFLQGQSRYS VDMSPVKIFK NPEGSLSRAA ALQSALIKER REVREQQQRT MLDSIPKDLN
0401: RPWEDPMPET GERHLAQELR GVGLSAYDMP EWKKDAYGKA VTFGQRSKLS LQEQRQSLPI YKLKKELVQA VHDNQVLVVI GETGSGKTTQ VTQYLAEAGY
0501: TTRGKIGCTQ PRRVAATSVA KRVAEEFGCR LGEEVGYAIR FEDCTGPETV IKYMTDGMLW REILIDDNLS QYSVIMLDEA HERTINTDVL FGLLKQLMKR
0601: RPDLRLIVTS ATLDAEKFSG YFFDCNIFTI PGRTFPVEIL YTKQPESDYL DASLITVMQI HLTEPEGDIL LFLTGQEEID YACQCLYERM KGLGKNVPEL
0701: IILPVYSALP SEMQSRIFDP APPGKRKVVV ATNIAEASLT IDGIFYVIDP GFAKQNVYNP KQGLDSLVIT PISQASAKQR AGRAGRTGPG KCYRLYTESA
0801: FHSEMSPTAV PEIQRINLGN TVIMMKAMGI NDLLSFDFMD PPTPQALISA MEQLYTLGAL DEEGLLTKLG RKMAEFPLDP PLSKMLLASV DFGCSDEILT
0901: IIAMIQTGNV FYRPREKQAQ ADQKKAKFFQ PEGDHLTLFA VYEAWKAKNF SGPWCFENFV QSRSLRRAQD VRKQLLSIMD KYKLDVVSAG RNFTKIQKAI
1001: GAGFFFHAAR KDPQEGYRTL VENQPVYIHP SSALFQRQPD WVIYHELVMT TKEYMREVTV VDPKWLVELA PRFFKTADPT KLTKRKRQER IEPLYDRYNE
1101: PNSWRLSKRR A
0101: DRDDGRVERR ASERRRDRDG DGDVYAKGSR DDYEQDGDDD RRDRRKSRHH VDEPELYAVY KGRVSRVMDS GCFVQLNEFR GKEGLVHVSQ LATRRVSNAK
0201: DLVKRDQDVF VKVISISGQK LSLSMRDVDQ NTGKDLLPLK KSSDGGGLTT NPSGMNNEGS KTGIGLSGIR IAEQEDVVPS RRPVKRMSSP EKWEAKQLIA
0301: AGVLGVHEHP MFDEEGDGML YQEEDGVDEE LEVELNEDEP PFLQGQSRYS VDMSPVKIFK NPEGSLSRAA ALQSALIKER REVREQQQRT MLDSIPKDLN
0401: RPWEDPMPET GERHLAQELR GVGLSAYDMP EWKKDAYGKA VTFGQRSKLS LQEQRQSLPI YKLKKELVQA VHDNQVLVVI GETGSGKTTQ VTQYLAEAGY
0501: TTRGKIGCTQ PRRVAATSVA KRVAEEFGCR LGEEVGYAIR FEDCTGPETV IKYMTDGMLW REILIDDNLS QYSVIMLDEA HERTINTDVL FGLLKQLMKR
0601: RPDLRLIVTS ATLDAEKFSG YFFDCNIFTI PGRTFPVEIL YTKQPESDYL DASLITVMQI HLTEPEGDIL LFLTGQEEID YACQCLYERM KGLGKNVPEL
0701: IILPVYSALP SEMQSRIFDP APPGKRKVVV ATNIAEASLT IDGIFYVIDP GFAKQNVYNP KQGLDSLVIT PISQASAKQR AGRAGRTGPG KCYRLYTESA
0801: FHSEMSPTAV PEIQRINLGN TVIMMKAMGI NDLLSFDFMD PPTPQALISA MEQLYTLGAL DEEGLLTKLG RKMAEFPLDP PLSKMLLASV DFGCSDEILT
0901: IIAMIQTGNV FYRPREKQAQ ADQKKAKFFQ PEGDHLTLFA VYEAWKAKNF SGPWCFENFV QSRSLRRAQD VRKQLLSIMD KYKLDVVSAG RNFTKIQKAI
1001: GAGFFFHAAR KDPQEGYRTL VENQPVYIHP SSALFQRQPD WVIYHELVMT TKEYMREVTV VDPKWLVELA PRFFKTADPT KLTKRKRQER IEPLYDRYNE
1101: PNSWRLSKRR A
0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.