Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0301500-01 | Rice | nucleus | 43.28 | 94.32 |
| CDY51663 | Canola | nucleus | 4.96 | 93.65 |
| PGSC0003DMT400056692 | Potato | nucleus | 89.58 | 93.43 |
| Solyc01g110990.2.1 | Tomato | nucleus | 86.97 | 93.16 |
| CDX91491 | Canola | nucleus | 4.87 | 92.06 |
| CDY23338 | Canola | cytosol | 31.51 | 88.86 |
| VIT_08s0056g00470.t01 | Wine grape | nucleus | 84.54 | 85.62 |
| GSMUA_Achr10P... | Banana | nucleus | 68.91 | 84.1 |
| CDX83624 | Canola | nucleus | 78.15 | 83.41 |
| KRH05918 | Soybean | nucleus | 83.61 | 83.12 |
| KRH17401 | Soybean | nucleus | 83.87 | 82.96 |
| CDY13640 | Canola | nucleus | 78.32 | 82.84 |
| AT3G26560.1 | Thale cress | nucleus | 80.76 | 82.28 |
| KRG97372 | Soybean | nucleus | 66.64 | 82.01 |
| Bra025211.1-P | Field mustard | nucleus | 79.83 | 81.13 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 81.51 | 78.61 |
| Bra040091.1-P | Field mustard | nucleus | 52.18 | 78.51 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 81.34 | 78.44 |
| EER95349 | Sorghum | nucleus | 81.34 | 77.94 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 81.26 | 77.86 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 80.84 | 77.83 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 81.43 | 75.17 |
| Os06t0343100-01 | Rice | nucleus | 66.97 | 73.52 |
| EES15324 | Sorghum | nucleus | 65.88 | 73.2 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 64.45 | 71.28 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 64.71 | 71.16 |
| Zm00001d031581_P002 | Maize | nucleus | 65.04 | 58.46 |
| Solyc01g079250.2.1 | Tomato | nucleus | 30.08 | 49.52 |
| Solyc09g097820.2.1 | Tomato | nucleus | 27.31 | 46.9 |
| Solyc12g089010.1.1 | Tomato | nucleus | 31.34 | 46.05 |
| Solyc03g115390.2.1 | Tomato | nucleus | 34.54 | 45.21 |
| Solyc09g008120.2.1 | Tomato | nucleus | 26.81 | 44.87 |
| Solyc12g017700.1.1 | Tomato | nucleus | 32.52 | 43.68 |
| Solyc05g015040.2.1 | Tomato | nucleus | 25.21 | 42.86 |
| Solyc10g076910.1.1 | Tomato | nucleus | 36.22 | 33.54 |
| Solyc01g006970.2.1 | Tomato | nucleus | 23.03 | 26.58 |
| Solyc01g006710.2.1 | Tomato | mitochondrion | 22.1 | 22.59 |
| Solyc04g007510.2.1 | Tomato | plastid | 21.26 | 21.92 |
| Solyc03g118920.2.1 | Tomato | mitochondrion, nucleus | 21.85 | 21.65 |
| Solyc01g095710.2.1 | Tomato | nucleus | 22.35 | 19.84 |
| Solyc07g044930.2.1 | Tomato | nucleus | 18.99 | 18.85 |
| Solyc01g103690.2.1 | Tomato | nucleus | 20.76 | 17.18 |
| Solyc04g014210.2.1 | Tomato | nucleus | 22.18 | 15.26 |
| Solyc11g010310.1.1 | Tomato | nucleus | 21.26 | 14.84 |
Protein Annotations
| Gene3D:2.40.50.140 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS |
| InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR003029 | InterPro:IPR014001 | UniProt:K4CDT1 | InterPro:NA-bd_OB-fold |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00575 | PFAM:PF04408 | PFAM:PF07717 |
| ScanProsite:PS00690 | PFscan:PS50126 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF120 |
| InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF50249 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc07g039550.2 | EnsemblPlants:Solyc07g039550.2.1 | UniParc:UPI000276B60F | SEG:seg |
Description
No Description!
Coordinates
chr7:-:47715963..47720015
Molecular Weight (calculated)
136138.0 Da
IEP (calculated)
6.537
GRAVY (calculated)
-0.636
Length
1190 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGADSEENEL KKLEYLSLIS KVCSELEAHL GFGDKVLAEF ITELGRNCST VDEFDAKLKE SGAEMPDYFV RTLLTIIHAI LPPKLTSKSD KDLNKDNNDS
0101: EFSALKIRDN RERVKELEKE IELEAKTKRR DGEEEERGSR RERDRDYRRE RGRDKDRGRD RHRNDYDDGR AECRTSERHR DRDRDRVRDR DMVRDRDRTN
0201: DDDAYAKGRR DEYEQESDDD RRDMRKLRHH MDEPELYAVY KGRVSRVMDS GCFVQLSDFR GKEGLVHVSQ LATRRVTNAK DLVKRDQEVF VKVISISGQK
0301: LSLSMRDVDQ NTGKDLLPLK KSLGDDQLTT HPSTMNGEGS KTRIGLSGIR ITEQEDVIPS RRPLKRMSSP EKWEAKQLIA AGVLGVQEHP MFDEEGDGML
0401: YQEEGAEEEL EVELNEDEPP FLQGQSRYSV DMSPVKIFKN PEGSLSRAAA LQSALIKERR EVREQQQRTM LDSIPKDLNR PWEDPMPETG ERHLAQELRG
0501: VGLSAYDMPE WKKDAYGKAL TFGQRSKLSL QEQRQSLPIY KLKKELVQAV HDNQVLVVIG ETGSGKTTQV TQYLAEAGYT TKGKIGCTQP RRVAAMSVAK
0601: RVAEEFGCRL GEEVGYAIRF EDCTGPETVI KYMTDGMLLR EILIDDNLSQ YSVVMLDEAH ERTIHTDVLF GLLKQLMKRR PDLRLIVTSA TLDAEKFSGY
0701: FFDCNIFTIP GRTFPVEILY TKQPESDYLD AALITVMQIH LTEPEGDILL FLTGQEEIDY ACQCLYERMK GLGKNVPELI ILPVYSALPS EMQSRIFDPA
0801: PPGKRKVVVA TNIAEASLTI DGIYYVIDPG FAKQNVYNPK QGLDSLVITP ISQASAKQRA GRAGRTGPGK CYRLYTESAF HSEMSPTAIP EIQRINLGNT
0901: VLMMKAMGIN DLLSFDFMDP PSPQALISAM EQLYTLGALD EEGLLTKLGR KMAEFPLDPP LSKMLLASVD LGCSDEILTI IAMIQTGNIF YRPREKQAQA
1001: DQKRAKFFQP EGDHLTLLAV YEAWKAKNFS GPWCFENFVQ SRSLRRAQDV RKQLLSIMDK YKLDVVSAGK NFTKIRKAIG AGFFFHAARK DPQEGYRTLV
1101: ENQPVYIHPS SALFQRQPDW VIYHELVMTT KEYMREVTVV DPKWLVELAP RFFKVSDPTK LSKRKRQERI EPLYDRYHEP NSWRLSKRRA
0101: EFSALKIRDN RERVKELEKE IELEAKTKRR DGEEEERGSR RERDRDYRRE RGRDKDRGRD RHRNDYDDGR AECRTSERHR DRDRDRVRDR DMVRDRDRTN
0201: DDDAYAKGRR DEYEQESDDD RRDMRKLRHH MDEPELYAVY KGRVSRVMDS GCFVQLSDFR GKEGLVHVSQ LATRRVTNAK DLVKRDQEVF VKVISISGQK
0301: LSLSMRDVDQ NTGKDLLPLK KSLGDDQLTT HPSTMNGEGS KTRIGLSGIR ITEQEDVIPS RRPLKRMSSP EKWEAKQLIA AGVLGVQEHP MFDEEGDGML
0401: YQEEGAEEEL EVELNEDEPP FLQGQSRYSV DMSPVKIFKN PEGSLSRAAA LQSALIKERR EVREQQQRTM LDSIPKDLNR PWEDPMPETG ERHLAQELRG
0501: VGLSAYDMPE WKKDAYGKAL TFGQRSKLSL QEQRQSLPIY KLKKELVQAV HDNQVLVVIG ETGSGKTTQV TQYLAEAGYT TKGKIGCTQP RRVAAMSVAK
0601: RVAEEFGCRL GEEVGYAIRF EDCTGPETVI KYMTDGMLLR EILIDDNLSQ YSVVMLDEAH ERTIHTDVLF GLLKQLMKRR PDLRLIVTSA TLDAEKFSGY
0701: FFDCNIFTIP GRTFPVEILY TKQPESDYLD AALITVMQIH LTEPEGDILL FLTGQEEIDY ACQCLYERMK GLGKNVPELI ILPVYSALPS EMQSRIFDPA
0801: PPGKRKVVVA TNIAEASLTI DGIYYVIDPG FAKQNVYNPK QGLDSLVITP ISQASAKQRA GRAGRTGPGK CYRLYTESAF HSEMSPTAIP EIQRINLGNT
0901: VLMMKAMGIN DLLSFDFMDP PSPQALISAM EQLYTLGALD EEGLLTKLGR KMAEFPLDPP LSKMLLASVD LGCSDEILTI IAMIQTGNIF YRPREKQAQA
1001: DQKRAKFFQP EGDHLTLLAV YEAWKAKNFS GPWCFENFVQ SRSLRRAQDV RKQLLSIMDK YKLDVVSAGK NFTKIRKAIG AGFFFHAARK DPQEGYRTLV
1101: ENQPVYIHPS SALFQRQPDW VIYHELVMTT KEYMREVTVV DPKWLVELAP RFFKVSDPTK LSKRKRQERI EPLYDRYHEP NSWRLSKRRA
0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.