CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91491	Canola	nucleus	98.41	98.41
CDY23338	Canola	cytosol	95.24	14.22
Os02t0301500-01	Rice	nucleus	93.65	10.81
PGSC0003DMT400084916	Potato	nucleus	90.48	7.12
GSMUA_Achr10P...	Banana	nucleus	93.65	6.05
CDX83624	Canola	nucleus	100.0	5.65
CDY13640	Canola	nucleus	100.0	5.6
CDY37024	Canola	cytosol, mitochondrion	28.57	5.56
VIT_08s0056g00470.t01	Wine grape	nucleus	98.41	5.28
AT3G26560.1	Thale cress	nucleus	96.83	5.22
Solyc01g110990.2.1	Tomato	nucleus	90.48	5.13
Os06t0343100-01	Rice	nucleus	85.71	4.98
Solyc07g039550.2.1	Tomato	nucleus	93.65	4.96
Zm00001d015893_P001	Maize	nucleus, plasma membrane	95.24	4.85
EER95349	Sorghum	nucleus	95.24	4.83
TraesCS7D01G341800.1	Wheat	nucleus	82.54	4.81
TraesCS4B01G148500.1	Wheat	nucleus	93.65	4.78
TraesCS4A01G158200.1	Wheat	nucleus	93.65	4.78
EES15324	Sorghum	nucleus	80.95	4.76
HORVU0Hr1G007860.1	Barley	nucleus	93.65	4.75
TraesCS7B01G245800.1	Wheat	nucleus	80.95	4.74
TraesCS4D01G147900.1	Wheat	nucleus	93.65	4.58
Zm00001d031581_P002	Maize	nucleus	76.19	3.63
CDX83337	Canola	cytosol	33.33	2.9
CDY11413	Canola	nucleus	31.75	2.79
CDX95715	Canola	cytosol	31.75	2.76
CDX76626	Canola	nucleus	30.16	2.65
CDY23802	Canola	nucleus	19.05	2.29
CDX90112	Canola	nucleus	25.4	2.27
CDY60185	Canola	nucleus	30.16	2.21
CDY40514	Canola	nucleus	30.16	2.21
CDX78859	Canola	nucleus	23.81	2.15
CDX99466	Canola	nucleus	23.81	2.14
CDY11762	Canola	nucleus	23.81	2.13
CDY68405	Canola	nucleus	22.22	2.09
CDY36075	Canola	nucleus	20.63	1.93
CDX85017	Canola	cytosol, plastid	20.63	1.8
CDY26898	Canola	nucleus	28.57	1.72
CDY32278	Canola	endoplasmic reticulum	28.57	1.72
CDX85676	Canola	nucleus	33.33	1.68
CDX91151	Canola	nucleus	33.33	1.68
CDY16154	Canola	nucleus, plastid	19.05	1.66
CDY34567	Canola	nucleus	17.46	1.66
CDY32702	Canola	nucleus	17.46	1.59
PGSC0003DMT400056692	Potato	nucleus	26.98	1.49
CDY34159	Canola	nucleus	28.57	1.46
CDY48353	Canola	nucleus	26.98	1.39
CDY02818	Canola	nucleus	14.29	1.36
CDX79642	Canola	nucleus, vacuole	17.46	1.06
CDX84588	Canola	plastid, vacuole	17.46	1.06
CDY39917	Canola	nucleus	20.63	0.92
CDY29164	Canola	nucleus	20.63	0.91
CDY10756	Canola	nucleus	12.7	0.73
CDY29644	Canola	nucleus	14.29	0.69
CDX78376	Canola	plastid	17.46	0.63
CDX81170	Canola	plastid	17.46	0.62
CDX98799	Canola	mitochondrion	11.11	0.61
CDX70187	Canola	mitochondrion	11.11	0.61
CDX93688	Canola	plastid	11.11	0.59
CDY40601	Canola	nucleus, plastid	11.11	0.59
CDX96996	Canola	nucleus	15.87	0.57
CDY10215	Canola	nucleus	11.11	0.55
CDX97797	Canola	nucleus	11.11	0.54
CDY57512	Canola	nucleus	9.52	0.53
CDY17694	Canola	nucleus	9.52	0.53
CDX69841	Canola	plastid	14.29	0.51
CDY63687	Canola	nucleus, plastid	1.59	0.09
CDX74059	Canola	nucleus	0.0	0.0
CDX74061	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY51663	EnsemblPlantsGene:GSBRNA2T00003995001	PANTHER:PTHR18934	PANTHER:PTHR18934:SF120	ProteinID:CDY51663	ProteinID:CDY51663.1
UniParc:UPI0004EEF13D	UniProt:A0A078IRD7	MapMan:35.1	:	:	:

Description

BnaC03g67020DBnaC03g67020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRD7]

Coordinates

chrLK033017:-:37630..38034

Molecular Weight (calculated)

7819.5 Da

IEP (calculated)

10.662

GRAVY (calculated)

-1.111

Length

63 amino acids

Sequence
(BLAST)

1: MTTKEYMREV TVIDPKWLVE LAPRFFKVAD PTHMSKRKRQ ERIEPLYDRY HEPNSWRLSK RRA

Best Arabidopsis Sequence Match ( AT3G26560.1 )
(BLAST)

0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.