CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000445.1-P	Field mustard	cytosol	100.0	100.0
CDX95715	Canola	cytosol	98.76	98.48
AT2G47250.1	Thale cress	nucleus	95.44	94.65
CDX76626	Canola	nucleus	91.98	92.62
CDY11413	Canola	nucleus	91.29	91.92
KRH69191	Soybean	nucleus	88.66	88.78
KRH68290	Soybean	nucleus	88.11	88.47
KRG96553	Soybean	nucleus	88.11	88.35
TraesCS4A01G124200.2	Wheat	cytosol	87.69	88.18
TraesCS4D01G181700.1	Wheat	cytosol	87.55	87.79
TraesCS4B01G180200.1	Wheat	cytosol	87.55	87.79
HORVU4Hr1G052730.3	Barley	cytosol	87.55	87.79
PGSC0003DMT400023284	Potato	nucleus	87.55	87.55
VIT_07s0005g01770.t01	Wine grape	nucleus	88.11	87.5
Solyc01g079250.2.1	Tomato	nucleus	87.41	87.41
Zm00001d028923_P002	Maize	nucleus	86.45	86.69
KXG39505	Sorghum	cytosol	86.45	86.57
KRH31768	Soybean	cytosol, nucleus	66.39	83.19
CDY68405	Canola	nucleus	76.21	82.24
Os03t0314100-01	Rice	cytosol, nucleus, plastid	63.49	81.38
Zm00001d047601_P006	Maize	nucleus	85.34	79.82
GSMUA_Achr1P18470_001	Banana	cytosol	38.59	78.37
CDX74061	Canola	cytosol	29.05	65.42
CDX74059	Canola	nucleus	23.37	64.02
CDY23338	Canola	cytosol	26.42	45.26
CDY37024	Canola	cytosol, mitochondrion	20.06	44.75
CDX99466	Canola	nucleus	41.63	43.0
CDX78859	Canola	nucleus	41.36	42.84
CDY34567	Canola	nucleus	38.04	41.48
CDX85017	Canola	cytosol, plastid	41.08	41.14
CDY36075	Canola	nucleus	38.17	40.95
CDY16154	Canola	nucleus, plastid	40.94	40.94
CDY11762	Canola	nucleus	37.76	38.78
CDY32702	Canola	nucleus	37.07	38.73
CDX90112	Canola	nucleus	37.76	38.72
CDY60185	Canola	nucleus	45.5	38.3
CDY02818	Canola	nucleus	35.13	38.25
CDY40514	Canola	nucleus	44.95	37.75
CDY51663	Canola	nucleus	2.9	33.33
CDX91491	Canola	nucleus	2.9	33.33
CDY26898	Canola	nucleus	46.75	32.38
CDY32278	Canola	endoplasmic reticulum	46.75	32.38
CDX83624	Canola	nucleus	49.38	32.02
CDY13640	Canola	nucleus	49.52	31.82
CDY23802	Canola	nucleus	20.75	28.57
CDX85676	Canola	nucleus	41.36	23.96
CDX91151	Canola	nucleus	41.22	23.86
CDX79642	Canola	nucleus, vacuole	32.23	22.51
CDX84588	Canola	plastid, vacuole	32.09	22.42
CDY17694	Canola	nucleus	32.37	20.62
CDY57512	Canola	nucleus	32.09	20.44
CDY40601	Canola	nucleus, plastid	33.06	20.24
CDX93688	Canola	plastid	32.92	20.17
CDX70187	Canola	mitochondrion	32.09	20.07
CDX98799	Canola	mitochondrion	31.95	20.02
CDY10756	Canola	nucleus	29.32	19.47
CDY48353	Canola	nucleus	31.67	18.72
CDY34159	Canola	nucleus	31.81	18.59
CDX97797	Canola	nucleus	29.18	16.34
CDY29644	Canola	nucleus	29.05	16.07
CDY10215	Canola	nucleus	28.22	15.89
CDY39917	Canola	nucleus	28.08	14.37
CDY29164	Canola	nucleus	28.22	14.33
CDY63687	Canola	nucleus, plastid	21.85	14.23
CDX69841	Canola	plastid	30.57	12.51
CDX81170	Canola	plastid	30.29	12.42
CDX78376	Canola	plastid	30.15	12.41
CDX96996	Canola	nucleus	30.29	12.38

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	GO:A0A078D2I5	InterPro:AAA+_ATPase	EnsemblPlants:CDX83337
ProteinID:CDX83337	ProteinID:CDX83337.1	ncoils:Coil	InterPro:DUF1605	GO:GO:0003674	GO:GO:0003824
GO:GO:0004386	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00138899001	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
PFAM:PF13401	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI000253FF2C	SEG:seg	:

Description

BnaA03g21690D

Coordinates

chrLK031832:+:1103104..1106242

Molecular Weight (calculated)

82302.9 Da

IEP (calculated)

7.360

GRAVY (calculated)

-0.420

Length

723 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVMEDPSA KNNKSNVLGA ASAAAGINKW NGKPYSQRYY DILEKRRDLP VWLQKDEFLR TLQSSQTLIL VGETGSGKTT QIPQFVLDAV
101: EAENTNKHKK WLVGCTQPRR VAAMSVSRRV ADEMDVAIGE EVGYSIRFED CSGPRTMLKY LTDGMLLREA MADPLLERYK VIILDEAHER TLATDVLFGL
201: LKEVLRNRPD LKLVVMSATL EAEKFQEYFS GAPLMKVPGR LHPVEIFYTQ EPERDYLEAA IRTVVQIHMC EPPGDVLVFL TGEEEIEDAC RKINKEVSNL
301: GDQVGPVKVV PLYSTLPPAM QQKIFDPAPE PLTEGGPAGR KIVVSTNIAE TSLTIDGIVY VIDPGFAKQK VYNPRIRVES LLVSPISKAS AHQRSGRAGR
401: TRPGKCFRLY TEKSFNNDLQ PQTYPEILRS NLANTVLTLK KLGIDDLVHF DFMDPPAPET LMRALEVLNY LGALDDEGNL TRTGEIMSEF PLDPQMSKML
501: IVSPEFNCSN EILSVSAMLS VPNCFVRPRE AQKAADEAKS KFGHIDGDHL TLLNVYHAYK QNNEDPNWCF ENFVNNRAMK SADNVRQQLV RIMSRFNLKM
601: CSTDFNSRDY YVNIRKAMLS GYFMQVAHLE RTGHYLTVKD NQVVHLHPSN CLDHKPEWVI YNEYVLTTRN FIRTVTDIRG DWLVDVAPHY YDLSNFPNCE
701: AKRVLEKLYK KRERERNESK NRK

Best Arabidopsis Sequence Match ( AT2G47250.1 )
(BLAST)

001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.