Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d011636_P001 | |
| Zm00001d038909_P001 | |
| Zm00001d043784_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G62310.1 | Zm00001d011636_P001 | AT1G17970.1 | 21798944 |
| AT3G62310.1 | Zm00001d038909_P001 | AT1G17970.1 | 21798944 |
| AT3G62310.1 | Zm00001d043784_P002 | AT1G17970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39505 | Sorghum | cytosol | 97.92 | 97.78 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 94.73 | 94.99 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 94.73 | 94.73 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 94.59 | 94.59 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 94.59 | 94.59 |
| Zm00001d047601_P006 | Maize | nucleus | 97.36 | 90.81 |
| Os03t0314100-01 | Rice | cytosol, nucleus, plastid | 69.9 | 89.36 |
| KRG96553 | Soybean | nucleus | 88.63 | 88.63 |
| KRH69191 | Soybean | nucleus | 88.21 | 88.09 |
| KRH68290 | Soybean | nucleus | 87.93 | 88.06 |
| VIT_07s0005g01770.t01 | Wine grape | nucleus | 88.07 | 87.23 |
| Bra000445.1-P | Field mustard | cytosol | 86.69 | 86.45 |
| CDX83337 | Canola | cytosol | 86.69 | 86.45 |
| PGSC0003DMT400023284 | Potato | nucleus | 86.27 | 86.03 |
| Solyc01g079250.2.1 | Tomato | nucleus | 86.13 | 85.89 |
| CDX95715 | Canola | cytosol | 86.27 | 85.79 |
| CDX76626 | Canola | nucleus | 85.3 | 85.65 |
| AT2G47250.1 | Thale cress | nucleus | 86.55 | 85.6 |
| Bra007671.1-P | Field mustard | nucleus | 85.02 | 85.38 |
| AT3G62310.1 | Thale cress | nucleus | 85.85 | 85.26 |
| CDY11413 | Canola | nucleus | 84.88 | 85.24 |
| KRH31768 | Soybean | cytosol, nucleus | 65.33 | 81.63 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 40.08 | 81.18 |
| Bra003744.1-P | Field mustard | nucleus | 72.82 | 78.36 |
| CDY68405 | Canola | nucleus | 72.26 | 77.76 |
| AT5G14900.1 | Thale cress | cytosol | 29.96 | 71.76 |
| CDX74061 | Canola | cytosol | 28.57 | 64.17 |
| CDX74059 | Canola | nucleus | 23.16 | 63.26 |
| Bra001237.1-P | Field mustard | cytosol | 37.31 | 62.27 |
| Bra001238.1-P | Field mustard | cytosol, mitochondrion | 22.33 | 60.98 |
| Zm00001d049980_P001 | Maize | plasma membrane | 41.05 | 42.41 |
| Zm00001d011963_P002 | Maize | plasma membrane | 41.05 | 41.05 |
| Zm00001d045147_P015 | Maize | nucleus | 36.2 | 36.97 |
| Zm00001d045376_P001 | Maize | cytosol | 16.09 | 35.15 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 49.93 | 29.13 |
| Zm00001d039380_P001 | Maize | nucleus | 37.31 | 28.41 |
| Zm00001d031581_P002 | Maize | nucleus | 47.85 | 26.06 |
| Zm00001d019056_P001 | Maize | nucleus | 6.93 | 25.0 |
| Zm00001d032735_P001 | Maize | plastid | 33.43 | 23.31 |
| Zm00001d006459_P003 | Maize | plastid | 40.92 | 21.92 |
| Zm00001d034013_P002 | Maize | golgi, mitochondrion, vacuole | 32.73 | 19.68 |
| Zm00001d017967_P003 | Maize | nucleus | 32.45 | 18.3 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 28.99 | 16.08 |
| Zm00001d040082_P003 | Maize | plastid | 31.21 | 15.99 |
| Zm00001d003655_P006 | Maize | nucleus, plastid | 30.51 | 15.45 |
| Zm00001d022176_P002 | Maize | nucleus | 29.82 | 12.27 |
Protein Annotations
| Gene3D:1.20.120.1080 | EntrezGene:100191798 | MapMan:16.4.7.3.3 | Gene3D:3.40.50.300 | EMBL:BT063319 | UniProt:C0P4V0 |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | ProteinID:ONL97407.1 | ProteinID:ONL97414.1 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF193 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 |
| UniParc:UPI0001948BF1 | EnsemblPlantsGene:Zm00001d028923 | EnsemblPlants:Zm00001d028923_P002 | EnsemblPlants:Zm00001d028923_T002 | SEG:seg | : |
Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
Coordinates
chr1:+:51720934..51725330
Molecular Weight (calculated)
81740.3 Da
IEP (calculated)
7.360
GRAVY (calculated)
-0.385
Length
721 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTERKRKVS LFDVVDETSV SAKLRAASNG AAATATGGNP SVNRWNGRPY TARYFDILEK RRTLPVWQQK EEFLRSLRDN QTLILVGETG SGKTTQIPQF
101: VLETEGLGNR SMVACTQPRR VAAMSVSRRV AEEMDVTIGE EVGYSIRFED CSSHKTVLKY LTDGMLLREA MADPLLEKYK VIVLDEAHER TLATDVLFGL
201: LKEVLKNRPD LKLVVMSATL EAEKFQGYFN GAPLMKVPGR LHPVEIFYTQ EPERDYLEAA IRTVMQIHMC EPAGDILVFL TGEEEIEDAC RKINKETNNM
301: GDQVGPVKVV PLYSTLPPAM QQKIFEPAPA PLKEGGPPGR KIVVSTNIAE TSLTIDGIVY VIDPGFSKQK VYNPRIRVES LLVSPISKAS AHQRAGRAGR
401: TQPGKCFRLY TEKSFNEDLQ PQTYPEILRS NLANTVLTLK KLGIDDLVHF DFMDPPAPET LMRALEVLNY LGALDDEGNL TQLGEMMSEF PLDPQMSKML
501: VISPKYNCSN EILSVSAMLS APNCFLRPRD AQKAADEAKA RFGHIDGDHL TLLNVYHAYK QNNEDPQWCY ENFVNSRALK SADNVRQQLV RIMTRFNLKM
601: CSTDFNSREY YVNIRKAMLA GYFMQVAHLE RTGHYLTVKD NQVVHLHPSN CMDHKPEWVI YNEYVLTTRN FIRTVTDIRG DWLIDIAPHY YDLSNFPSCE
701: AKRVLERLYN KRERERAANR G
101: VLETEGLGNR SMVACTQPRR VAAMSVSRRV AEEMDVTIGE EVGYSIRFED CSSHKTVLKY LTDGMLLREA MADPLLEKYK VIVLDEAHER TLATDVLFGL
201: LKEVLKNRPD LKLVVMSATL EAEKFQGYFN GAPLMKVPGR LHPVEIFYTQ EPERDYLEAA IRTVMQIHMC EPAGDILVFL TGEEEIEDAC RKINKETNNM
301: GDQVGPVKVV PLYSTLPPAM QQKIFEPAPA PLKEGGPPGR KIVVSTNIAE TSLTIDGIVY VIDPGFSKQK VYNPRIRVES LLVSPISKAS AHQRAGRAGR
401: TQPGKCFRLY TEKSFNEDLQ PQTYPEILRS NLANTVLTLK KLGIDDLVHF DFMDPPAPET LMRALEVLNY LGALDDEGNL TQLGEMMSEF PLDPQMSKML
501: VISPKYNCSN EILSVSAMLS APNCFLRPRD AQKAADEAKA RFGHIDGDHL TLLNVYHAYK QNNEDPQWCY ENFVNSRALK SADNVRQQLV RIMTRFNLKM
601: CSTDFNSREY YVNIRKAMLA GYFMQVAHLE RTGHYLTVKD NQVVHLHPSN CMDHKPEWVI YNEYVLTTRN FIRTVTDIRG DWLIDIAPHY YDLSNFPSCE
701: AKRVLERLYN KRERERAANR G
001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.