Factsheet for Bra001238.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74059	Canola	nucleus	93.18	93.18
Bra001237.1-P	Field mustard	cytosol	88.26	53.94
Os03t0314100-01	Rice	cytosol, nucleus, plastid	60.23	28.19
GSMUA_Achr1P18470_001	Banana	cytosol	37.5	27.81
Bra003744.1-P	Field mustard	nucleus	61.74	24.33
KRH31768	Soybean	cytosol, nucleus	52.27	23.92
TraesCS4A01G124200.2	Wheat	cytosol	62.5	22.95
TraesCS4D01G181700.1	Wheat	cytosol	62.5	22.88
TraesCS4B01G180200.1	Wheat	cytosol	62.5	22.88
HORVU4Hr1G052730.3	Barley	cytosol	62.5	22.88
Bra000445.1-P	Field mustard	cytosol	62.5	22.82
Bra007671.1-P	Field mustard	nucleus	61.36	22.56
KRH68290	Soybean	nucleus	60.98	22.36
Zm00001d028923_P002	Maize	nucleus	60.98	22.33
KRG96553	Soybean	nucleus	60.98	22.33
KXG39505	Sorghum	cytosol	60.98	22.3
KRH69191	Soybean	nucleus	60.61	22.16
PGSC0003DMT400023284	Potato	nucleus	59.47	21.72
Solyc01g079250.2.1	Tomato	nucleus	59.47	21.72
VIT_07s0005g01770.t01	Wine grape	nucleus	59.85	21.7
Zm00001d047601_P006	Maize	nucleus	60.23	20.57
Bra040328.1-P	Field mustard	cytosol, mitochondrion	15.53	19.16
Bra013313.1-P	Field mustard	nucleus	42.8	16.21
Bra010915.1-P	Field mustard	nucleus	41.67	15.6
Bra024720.1-P	Field mustard	nucleus	39.77	14.27
Bra011023.1-P	Field mustard	nucleus	36.74	14.08
Bra038498.1-P	Field mustard	nucleus	44.32	12.99
Bra010168.1-P	Field mustard	nucleus	46.21	11.69
Bra025211.1-P	Field mustard	nucleus	45.45	10.25
Bra023043.1-P	Field mustard	nucleus	37.88	10.05
Bra023387.1-P	Field mustard	nucleus	39.77	8.41
Bra009414.1-P	Field mustard	mitochondrion	35.98	8.23
Bra018747.1-P	Field mustard	plastid	34.47	7.71
Bra032998.1-P	Field mustard	nucleus	35.23	7.52
Bra024903.1-P	Field mustard	nucleus	31.82	7.4
Bra018293.1-P	Field mustard	plasma membrane, vacuole	30.3	6.06
Bra021665.1-P	Field mustard	nucleus	29.92	6.05
Bra009038.1-P	Field mustard	plastid	34.85	5.21
Bra006057.1-P	Field mustard	plastid	34.47	5.19
Bra040091.1-P	Field mustard	nucleus	14.39	4.8
Bra027890.1-P	Field mustard	nucleus	21.21	4.21

Protein Annotations

EnsemblPlants:Bra001238.1	EnsemblPlants:Bra001238.1-P	EnsemblPlantsGene:Bra001238	Gene3D:1.10.10.2130	Gene3D:3.40.50.300	InterPro:Helicase_C
InterPro:IPR001650	InterPro:P-loop_NTPase	PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	PFAM:PF00271	PFscan:PS51194
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002540461	UniProt:M4CAK9	MapMan:35.1	:

Description

AT2G47250 (E=1e-079) | RNA helicase, putative

Coordinates

chrA03:+:15465269..15466063

Molecular Weight (calculated)

29810.1 Da

IEP (calculated)

5.340

GRAVY (calculated)

-0.001

Length

264 amino acids

Sequence
(BLAST)

001: MSATLQAFNR EYFRGAPLIK VPSGRLLHPV EILYTRQPVM DYLESSISKV IEIHMCEPTG DVLVFLTGEE EIEHACSRIV RSLGDQVTVV LLYSSLPPAL
101: QHKIFDPTPP PHAVRKIIVS TNVAETSLSM DGIVYVVDPG FSKQKNYSFL TTDELWFVSR ISQASAYQRA GRAGKICFRL YTENTFNDFM DGETPEILRS
201: HLVITVLILK RLGVDDLTFF EYIDPPCTRM LLRALTDLFH RGAVDDQGNL TNIGHMMESL EEPL

Best Arabidopsis Sequence Match ( AT2G47250.1 )
(BLAST)

001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.