Factsheet for Zm00001d047601_P006

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011636_P001
Zm00001d038909_P001
Zm00001d043784_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62310.1	Zm00001d011636_P001	AT1G17970.1	21798944
AT3G62310.1	Zm00001d038909_P001	AT1G17970.1	21798944
AT3G62310.1	Zm00001d043784_P002	AT1G17970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39505	Sorghum	cytosol	91.33	97.78
Zm00001d028923_P002	Maize	nucleus	90.81	97.36
TraesCS4A01G124200.2	Wheat	cytosol	88.23	94.85
TraesCS4D01G181700.1	Wheat	cytosol	88.23	94.59
TraesCS4B01G180200.1	Wheat	cytosol	88.23	94.59
HORVU4Hr1G052730.3	Barley	cytosol	88.23	94.59
Os03t0314100-01	Rice	cytosol, nucleus, plastid	65.98	90.43
KRG96553	Soybean	nucleus	82.02	87.93
KRH68290	Soybean	nucleus	81.37	87.36
KRH69191	Soybean	nucleus	81.5	87.26
VIT_07s0005g01770.t01	Wine grape	nucleus	81.63	86.68
PGSC0003DMT400023284	Potato	nucleus	80.34	85.89
Solyc01g079250.2.1	Tomato	nucleus	80.21	85.75
CDX76626	Canola	nucleus	79.3	85.38
CDX83337	Canola	cytosol	79.82	85.34
Bra000445.1-P	Field mustard	cytosol	79.82	85.34
Bra007671.1-P	Field mustard	nucleus	79.04	85.1
CDY11413	Canola	nucleus	78.91	84.96
AT2G47250.1	Thale cress	nucleus	80.08	84.91
AT3G62310.1	Thale cress	nucleus	79.43	84.57
CDX95715	Canola	cytosol	79.3	84.55
GSMUA_Achr1P18470_001	Banana	cytosol	37.77	82.02
KRH31768	Soybean	cytosol, nucleus	60.28	80.76
Bra003744.1-P	Field mustard	nucleus	68.31	78.81
CDY68405	Canola	nucleus	67.66	78.06
AT5G14900.1	Thale cress	cytosol	28.07	72.09
CDX74061	Canola	cytosol	26.39	63.55
CDX74059	Canola	nucleus	21.35	62.5
Bra001237.1-P	Field mustard	cytosol	34.54	61.81
Bra001238.1-P	Field mustard	cytosol, mitochondrion	20.57	60.23
Zm00001d049980_P001	Maize	plasma membrane	37.9	41.98
Zm00001d011963_P002	Maize	plasma membrane	38.42	41.19
Zm00001d045147_P015	Maize	nucleus	33.64	36.83
Zm00001d045376_P001	Maize	cytosol	15.01	35.15
Zm00001d015893_P001	Maize	nucleus, plasma membrane	46.31	28.96
Zm00001d039380_P001	Maize	nucleus	34.54	28.19
Zm00001d031581_P002	Maize	nucleus	45.02	26.28
Zm00001d019056_P001	Maize	nucleus	6.6	25.5
Zm00001d032735_P001	Maize	plastid	31.31	23.4
Zm00001d006459_P003	Maize	plastid	37.39	21.47
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	30.27	19.52
Zm00001d017967_P003	Maize	nucleus	30.53	18.45
Zm00001d012661_P002	Maize	mitochondrion, plastid	26.78	15.92
Zm00001d040082_P003	Maize	plastid	28.59	15.71
Zm00001d003655_P006	Maize	nucleus, plastid	27.81	15.1
Zm00001d022176_P002	Maize	nucleus	27.81	12.27

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100282531	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	UniProt:A0A1D6PBS8	ProteinID:AQL07094.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF193	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI00084440C0
EnsemblPlantsGene:Zm00001d047601	EnsemblPlants:Zm00001d047601_P006	EnsemblPlants:Zm00001d047601_T006	SEG:seg	:	:

Description

Pre-mRNA-splicing factor ATP-dependent RNA helicase%3B Putative RNA helicase family protein

Coordinates

chr9:-:136758401..136763052

Molecular Weight (calculated)

87598.7 Da

IEP (calculated)

7.405

GRAVY (calculated)

-0.284

Length

773 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVVDETSV SGKLGRAASN GAAATAAGTN PSVNRWNGRP YTARYFEILE KRRTLPVWQQ KEEFLRRLRD NQTLILVGET GSGKTTQIPQ
101: FVLETEGLGN RSMVACTQPR RVAAMSVSRR VAEEMDVTIG EEVGYSIRFE DCSSHKTVLK YLTDGMLLRE AMADPLLEKY KVIVLDEAHE RTLATDVLFG
201: LLKEVLKNRP DLKLVVMSAT LEAEKFQGYF SDAPLMKVPG RLHPVEIFYT QEPERDYLEA AIRTVVQIHM CEPAGDILVF LTGEEEIEDA CRKINKEINN
301: MGDQVGPVKV VPLYSTLPPA MQQKIFEPAP APLKERGPPG RKIVVSTNIA ETSLTIDGIV YVIDPGFSKQ KVYNPRIRVE SLLVSPISKA SAHQRAGRAG
401: RTQPGKCFRL YTEKSFNEDL QPQTYPEILR SNLANTVLTL KKLGIDDLVH FDFMDPPAPE TLMRALEVLN YLAALDDEGN LTQLGEMMSE FPLDPQMSKM
501: LVISPKYNCS NEILSISAML LASLHLLTTV DFVCYYHILS LAPNCFLRPR EAQKAADEAK ARFGHIDGDH LTLLNVYHAY KQNSKSISLI QLGMHVAMVA
601: SVFSLPNSYF IGGADEDPQW CYENFINSRA LKSADNVRQQ LVRIMTRFNL KMCSTDFNSR EYYVNIRKTL LAGYFMQVAH LERTGHYLTV KDNQVVHLHP
701: SNCMDHKPEW VIYNEYVLTT RNFIRTVTDI RGEWLIDIAP HYYDLSNFPS CEAKRVLERL YNKRERERAA NRG

Best Arabidopsis Sequence Match ( AT1G32490.2 )
(BLAST)

0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEGGV DQEKRFSVAV
0301: QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV RRSLPIYTYR
0401: DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM TDGMLLRELL
0501: GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI VTILTIHVRE
0601: PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK MKSYNPRTGM
0701: ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL FALGALNKLG
0801: ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST QWCYENYIQV
0901: RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK EYMRQVTELK
1001: PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM

Arabidopsis Description

ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.