Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32067 | Sorghum | mitochondrion | 81.81 | 92.75 |
| Os01t0118100-01 | Rice | cytosol, mitochondrion, nucleus | 51.39 | 88.39 |
| HORVU3Hr1G002800.8 | Barley | mitochondrion | 74.13 | 83.64 |
| TraesCS3B01G024900.1 | Wheat | mitochondrion | 74.06 | 83.56 |
| TraesCS3A01G021300.1 | Wheat | extracellular | 73.85 | 83.52 |
| TraesCS3D01G025600.1 | Wheat | mitochondrion, nucleus, plastid | 73.06 | 82.77 |
| VIT_17s0000g03030.t01 | Wine grape | nucleus | 55.72 | 74.17 |
| GSMUA_Achr3P20920_001 | Banana | mitochondrion, nucleus | 63.11 | 70.98 |
| KRH60477 | Soybean | plastid | 55.37 | 66.02 |
| KRH41772 | Soybean | plastid | 54.94 | 65.68 |
| CDY40601 | Canola | nucleus, plastid | 54.3 | 64.69 |
| Bra018747.1-P | Field mustard | plastid | 54.16 | 64.58 |
| CDX93688 | Canola | plastid | 54.16 | 64.58 |
| AT1G48650.2 | Thale cress | nucleus, plastid | 54.44 | 63.52 |
| Solyc03g118920.2.1 | Tomato | mitochondrion, nucleus | 53.87 | 63.11 |
| Zm00001d034013_P002 | Maize | golgi, mitochondrion, vacuole | 48.12 | 56.46 |
| Zm00001d045376_P001 | Maize | cytosol | 12.58 | 53.64 |
| Zm00001d032735_P001 | Maize | plastid | 31.56 | 42.94 |
| Zm00001d019056_P001 | Maize | nucleus | 5.54 | 39.0 |
| Zm00001d028923_P002 | Maize | nucleus | 15.99 | 31.21 |
| Zm00001d045147_P015 | Maize | nucleus | 14.43 | 28.75 |
| Zm00001d049980_P001 | Maize | plasma membrane | 14.21 | 28.65 |
| Zm00001d047601_P006 | Maize | nucleus | 15.71 | 28.59 |
| Zm00001d011963_P002 | Maize | plasma membrane | 14.57 | 28.43 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 24.45 | 26.46 |
| Zm00001d003655_P006 | Maize | nucleus, plastid | 24.95 | 24.65 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 18.91 | 21.52 |
| Zm00001d039380_P001 | Maize | nucleus | 14.43 | 21.44 |
| Zm00001d031581_P002 | Maize | nucleus | 18.19 | 19.34 |
| Zm00001d006459_P003 | Maize | plastid | 17.91 | 18.72 |
| Zm00001d017967_P003 | Maize | nucleus | 15.64 | 17.2 |
| Zm00001d022176_P002 | Maize | nucleus | 17.63 | 14.16 |
Protein Annotations
| Gene3D:1.20.120.1080 | EntrezGene:103649879 | Gene3D:3.30.160.20 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6MMZ3 |
| InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014720 | ProteinID:ONM30521.1 | InterPro:P-loop_NTPase |
| PFAM:PF00035 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS50137 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF192 | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SignalP:SignalP-noTM | UniParc:UPI00084360F0 | EnsemblPlantsGene:Zm00001d040082 |
| EnsemblPlants:Zm00001d040082_P003 | EnsemblPlants:Zm00001d040082_T003 | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
DExH-box ATP-dependent RNA helicase DExH3
Coordinates
chr3:-:26319889..26343497
Molecular Weight (calculated)
158193.0 Da
IEP (calculated)
9.673
GRAVY (calculated)
-0.408
Length
1407 amino acids
Sequence
(BLAST)
(BLAST)
0001: MALTMVTFVL RFTHPCACAG PRCSCRCVRR DTTPQTPLVS DLPSHYQGLL TPFLTAIRHP ILSFETRVAA ARRHSPDHAA QSPSRFYAGV SVFSRSADPQ
0101: SLTLQRRTLR RAGFPRRAQS SGTGGGLHET CEPAVAATAL VVMLLTSVLR GRVRLLHRHR SLTMPSPLFL SRNPNTSLGT TNPHLSSPPV SAAMSTTGVY
0201: VPPMRRLRSV IASTNGSLAP PPSAAAQAQQ TRTPEWLVDG RSLSPQSPPQ LRRRDIPPLP RPPLPEHYRQ QSAGFARYAY DDFSEDDSDK DIDRTSVSSK
0301: GASTLDNVDE WKWKLHMLLR NDDEQEIISR ERKDRRDFEQ LAQLADRMRL HSRQYSRVVV FSKVPLPNYR SDLDDKRPQR EVSIPAGLQR EVDALLAGYV
0401: ARKGTYIGNF PSSAFSRSSS TDSFATDEGF FEQQDNQTST SAVMDRIQRR KSLQLRNQQA AWQESNDGQS MMEFRRSLPA YKEKQTLLEA ISQNQVIVVS
0501: GETGCGKTTQ LPQYILESEI DAARGATCSI ICTQPRRISA IAVSERVAAE RGEKIGESVC ARRDIQTKIV RTKWWKLKGE VQRSIREKKE CYRHLYYDRS
0601: VNNIDKYKVT KNTAKRANVG LQKDDMVGYK VRLEGMRGRD TRLLFCTTGV LLRRLLVDRN LKGVTHVIVD EIHERGMNED FLLIVLKDLL PRRPELRLIL
0701: MSATLNAELF SSYFGGAPMI HIPGFTYPVR SHFLEDILEI TGHWLTPYNQ IDDYGQEKSW KMQKQALQKR KSQIASVVEE RSGAILVFMT GWDDINALKE
0801: QLQANPLLGN PSAVLLLACH GSMASSEQKL IFDKPEPGVR KIVLATNLAE TSITINDVVF VVDCGKAKET SYDALNNTPC LLPTWISKAS ARQRRGRAGR
0901: VQPGECYHLY PRCVYDAFAD YQLPELLRTP LQSLCLQIKS LRLGSISEFL SRALQSPESL SVQNAIEYLK VIGAFDQNEE LTVLGKHLSM LPVEPKLGKM
1001: LIFGAIFNCL DPILTIVSGL SVRDPFLTPF DKKDLAESAK LQFSCRDYSD HLALVRAYDG WREAERDRAG YDYCWKNFLS VQTLKAIDSL RRQFLFLLKD
1101: TGLVDENMTM CNKWSRDENL VRAVICAGLY PGVSSVLNKE KSISLKTMED GQVMLYSSSV NGKETKIPFP WLVFNEKVKV NSVFLRDSTA ISDSILLLFG
1201: GCIKQGGLDG HLKMLGGYLE FFMNRDLAST YVSLKRELEN LIHCKLQNPR MDIQTSEELL SAIRLLVTED PCSGRFVYGR QEPRSKKAKT MLSPSSLSEA
1301: GGNGGDNAKN QLQTYLTRAG HSNPTYKTKQ IKSYLFRSTV EFNGMQFVGQ PCANKKLAEK DAASEALNWL TGDGGAITDS RGAQDADPMS LLMQPPRRRR
1401: HSHRRRN
0101: SLTLQRRTLR RAGFPRRAQS SGTGGGLHET CEPAVAATAL VVMLLTSVLR GRVRLLHRHR SLTMPSPLFL SRNPNTSLGT TNPHLSSPPV SAAMSTTGVY
0201: VPPMRRLRSV IASTNGSLAP PPSAAAQAQQ TRTPEWLVDG RSLSPQSPPQ LRRRDIPPLP RPPLPEHYRQ QSAGFARYAY DDFSEDDSDK DIDRTSVSSK
0301: GASTLDNVDE WKWKLHMLLR NDDEQEIISR ERKDRRDFEQ LAQLADRMRL HSRQYSRVVV FSKVPLPNYR SDLDDKRPQR EVSIPAGLQR EVDALLAGYV
0401: ARKGTYIGNF PSSAFSRSSS TDSFATDEGF FEQQDNQTST SAVMDRIQRR KSLQLRNQQA AWQESNDGQS MMEFRRSLPA YKEKQTLLEA ISQNQVIVVS
0501: GETGCGKTTQ LPQYILESEI DAARGATCSI ICTQPRRISA IAVSERVAAE RGEKIGESVC ARRDIQTKIV RTKWWKLKGE VQRSIREKKE CYRHLYYDRS
0601: VNNIDKYKVT KNTAKRANVG LQKDDMVGYK VRLEGMRGRD TRLLFCTTGV LLRRLLVDRN LKGVTHVIVD EIHERGMNED FLLIVLKDLL PRRPELRLIL
0701: MSATLNAELF SSYFGGAPMI HIPGFTYPVR SHFLEDILEI TGHWLTPYNQ IDDYGQEKSW KMQKQALQKR KSQIASVVEE RSGAILVFMT GWDDINALKE
0801: QLQANPLLGN PSAVLLLACH GSMASSEQKL IFDKPEPGVR KIVLATNLAE TSITINDVVF VVDCGKAKET SYDALNNTPC LLPTWISKAS ARQRRGRAGR
0901: VQPGECYHLY PRCVYDAFAD YQLPELLRTP LQSLCLQIKS LRLGSISEFL SRALQSPESL SVQNAIEYLK VIGAFDQNEE LTVLGKHLSM LPVEPKLGKM
1001: LIFGAIFNCL DPILTIVSGL SVRDPFLTPF DKKDLAESAK LQFSCRDYSD HLALVRAYDG WREAERDRAG YDYCWKNFLS VQTLKAIDSL RRQFLFLLKD
1101: TGLVDENMTM CNKWSRDENL VRAVICAGLY PGVSSVLNKE KSISLKTMED GQVMLYSSSV NGKETKIPFP WLVFNEKVKV NSVFLRDSTA ISDSILLLFG
1201: GCIKQGGLDG HLKMLGGYLE FFMNRDLAST YVSLKRELEN LIHCKLQNPR MDIQTSEELL SAIRLLVTED PCSGRFVYGR QEPRSKKAKT MLSPSSLSEA
1301: GGNGGDNAKN QLQTYLTRAG HSNPTYKTKQ IKSYLFRSTV EFNGMQFVGQ PCANKKLAEK DAASEALNWL TGDGGAITDS RGAQDADPMS LLMQPPRRRR
1401: HSHRRRN
0001: MQLYSAIFRG HIRPNAVVGA ASMFIQHNSI QLHRSPKLLL RPSSVVRSLH CRRSGGLVTH SQRSRVLCVK AARGDASSST LGIEWRAANL PYFQRQNSGY
0101: GRIAYNDYES SDESDRDVGS SQSQQMAGST LDNIDQWRFK LTMLLRNKED QEVVSRERKD RRDFDHISAL ATRMGLHSRQ YSKIVVISKA PLPNYRPDLD
0201: DKRPQREVVL PFGLQSEVDA HLHSFLDQKK TLIPEMPRQN SSESLANGYG NYETPETVMQ NSLARERILR PRSLQLKSKQ QQWVDSPEGQ KMVGFRKTLP
0301: AYKEKDALLK AIAANQVVVV SGETGCGKTT QLPQYILESE IEAARGATCS IICTQPRRIS AISVSERVAA ERGEQIGESV GYKVRLEGMR GRDTRLLFCT
0401: TGVLLRRLLV DRSLKGVTHV VVDEIHERGM NEDFLLIVLK DLLPRRPDLK LILMSATLNA ELFSSYFGGA PAMHIPGFTY PVRAHFLEDY LETSGYRLTT
0501: YNQIDDYGEE KTWKMQKQAQ FKKRKSLISS AVEDALEAAD FKGYNFRTRD SLSCWSPDSI GFNLIENVLC HIVKGERPGA VLVFMTGWDD INSLKNQLEA
0601: HSLLGDPNKV LLLACHGSMA SSEQRLIFDR PPEGIRKIVL ATNMAETSIT INDVVYVIDC GKAKETSYDA LNNTPCLLPS WISKAAARQR RGRAGRVMPG
0701: ECYHLYPRCV YEAFADYQQP ELLRTPLQSL CLQIKSLGLG SISEFLSRAL QPPEALSVQN AVEYLKIIGA LDDDENLTPL GKNLSMLPVE PKLGKMLILG
0801: AIFNCLDPVM TVVAGLSVRD PFLMPFDKKD LAETARSKFS GRDYSDHLTL VRAYNGWKDA ERTHSGYDYC WKNFLSSQTL KAMDSMRKQF FNLLKEASLI
0901: DNIEGCSKLS HDEHLVRAII CAGMFPGVCS VVNKEKSITL KTMEDGQVLL YSSSVNGNVP MIPFPWLVFN DKVKVNSVFL RDSTAVSDSV LLLFGDKISS
1001: GGFDGHLKML GGYLEFFMKP TLAYTYLSLK RELDELIQNK LVNPKLDIQL YDKLMTAIRL LVSEDQCEGR FVYGRKALSP TPAKKLKDVG AQLQNSGGEN
1101: NKNQLQTLLA RAGHGSPVYK TRQLKNNQFR SMVTFNGLDF MGKPCGSKKN AEKDAAHEAL LWLQGESKSS LNDLNHMSML LKKNKSKNHA KASTKWG
0101: GRIAYNDYES SDESDRDVGS SQSQQMAGST LDNIDQWRFK LTMLLRNKED QEVVSRERKD RRDFDHISAL ATRMGLHSRQ YSKIVVISKA PLPNYRPDLD
0201: DKRPQREVVL PFGLQSEVDA HLHSFLDQKK TLIPEMPRQN SSESLANGYG NYETPETVMQ NSLARERILR PRSLQLKSKQ QQWVDSPEGQ KMVGFRKTLP
0301: AYKEKDALLK AIAANQVVVV SGETGCGKTT QLPQYILESE IEAARGATCS IICTQPRRIS AISVSERVAA ERGEQIGESV GYKVRLEGMR GRDTRLLFCT
0401: TGVLLRRLLV DRSLKGVTHV VVDEIHERGM NEDFLLIVLK DLLPRRPDLK LILMSATLNA ELFSSYFGGA PAMHIPGFTY PVRAHFLEDY LETSGYRLTT
0501: YNQIDDYGEE KTWKMQKQAQ FKKRKSLISS AVEDALEAAD FKGYNFRTRD SLSCWSPDSI GFNLIENVLC HIVKGERPGA VLVFMTGWDD INSLKNQLEA
0601: HSLLGDPNKV LLLACHGSMA SSEQRLIFDR PPEGIRKIVL ATNMAETSIT INDVVYVIDC GKAKETSYDA LNNTPCLLPS WISKAAARQR RGRAGRVMPG
0701: ECYHLYPRCV YEAFADYQQP ELLRTPLQSL CLQIKSLGLG SISEFLSRAL QPPEALSVQN AVEYLKIIGA LDDDENLTPL GKNLSMLPVE PKLGKMLILG
0801: AIFNCLDPVM TVVAGLSVRD PFLMPFDKKD LAETARSKFS GRDYSDHLTL VRAYNGWKDA ERTHSGYDYC WKNFLSSQTL KAMDSMRKQF FNLLKEASLI
0901: DNIEGCSKLS HDEHLVRAII CAGMFPGVCS VVNKEKSITL KTMEDGQVLL YSSSVNGNVP MIPFPWLVFN DKVKVNSVFL RDSTAVSDSV LLLFGDKISS
1001: GGFDGHLKML GGYLEFFMKP TLAYTYLSLK RELDELIQNK LVNPKLDIQL YDKLMTAIRL LVSEDQCEGR FVYGRKALSP TPAKKLKDVG AQLQNSGGEN
1101: NKNQLQTLLA RAGHGSPVYK TRQLKNNQFR SMVTFNGLDF MGKPCGSKKN AEKDAAHEAL LWLQGESKSS LNDLNHMSML LKKNKSKNHA KASTKWG
Arabidopsis Description
DEA(D/H)-box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4HYJ6]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.