Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0335000-00 | Rice | cytosol, nucleus | 47.99 | 91.28 |
| KXG30390 | Sorghum | nucleus | 94.99 | 63.38 |
| EES02741 | Sorghum | nucleus | 94.99 | 63.38 |
| GSMUA_Achr4P23370_001 | Banana | nucleus | 68.05 | 63.33 |
| Bra040328.1-P | Field mustard | cytosol, mitochondrion | 18.91 | 61.68 |
| TraesCS4B01G374800.1 | Wheat | nucleus | 89.83 | 59.94 |
| KRH12910 | Soybean | cytosol, nucleus | 63.61 | 59.6 |
| TraesCS4D01G362600.1 | Wheat | nucleus | 89.25 | 59.56 |
| Solyc03g115390.2.1 | Tomato | nucleus | 77.51 | 59.52 |
| HORVU4Hr1G088270.17 | Barley | mitochondrion | 89.54 | 57.87 |
| PGSC0003DMT400005723 | Potato | nucleus | 64.9 | 55.11 |
| KRH54662 | Soybean | nucleus | 79.94 | 53.35 |
| VIT_17s0000g06950.t01 | Wine grape | nucleus | 79.51 | 52.66 |
| PGSC0003DMT400063370 | Potato | nucleus | 77.51 | 51.52 |
| AT4G16680.2 | Thale cress | nucleus | 58.17 | 51.01 |
| Solyc12g017700.1.1 | Tomato | nucleus | 64.33 | 50.68 |
| CDY26898 | Canola | nucleus | 74.79 | 50.0 |
| AT1G32490.1 | Thale cress | cytosol | 74.79 | 50.0 |
| Bra010168.1-P | Field mustard | nucleus | 74.64 | 49.9 |
| CDY32278 | Canola | endoplasmic reticulum | 74.5 | 49.81 |
| KRH74752 | Soybean | nucleus | 71.49 | 48.35 |
| AT2G35340.1 | Thale cress | endoplasmic reticulum, nucleus | 71.35 | 47.7 |
| Bra038498.1-P | Field mustard | nucleus | 60.74 | 47.06 |
| CDY60185 | Canola | nucleus | 57.88 | 47.03 |
| CDY40514 | Canola | nucleus | 57.31 | 46.46 |
| KRH40933 | Soybean | cytosol | 37.25 | 42.69 |
| Zm00001d028923_P002 | Maize | nucleus | 42.41 | 41.05 |
| CDY37024 | Canola | cytosol, mitochondrion | 18.91 | 40.74 |
| Zm00001d047601_P006 | Maize | nucleus | 41.98 | 37.9 |
| Zm00001d011963_P002 | Maize | plasma membrane | 38.97 | 37.73 |
| KRH69386 | Soybean | cytosol | 13.04 | 34.6 |
| Zm00001d045147_P015 | Maize | nucleus | 33.09 | 32.72 |
| Zm00001d045376_P001 | Maize | cytosol | 14.9 | 31.52 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 46.99 | 26.54 |
| Zm00001d039380_P001 | Maize | nucleus | 34.81 | 25.66 |
| Zm00001d031581_P002 | Maize | nucleus | 46.99 | 24.77 |
| Zm00001d006459_P003 | Maize | plastid | 44.99 | 23.33 |
| Zm00001d019056_P001 | Maize | nucleus | 6.16 | 21.5 |
| Zm00001d032735_P001 | Maize | plastid | 30.8 | 20.79 |
| Zm00001d017967_P003 | Maize | nucleus | 33.09 | 18.06 |
| Zm00001d034013_P002 | Maize | golgi, mitochondrion, vacuole | 29.94 | 17.43 |
| Zm00001d040082_P003 | Maize | plastid | 28.65 | 14.21 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 26.36 | 14.15 |
| Zm00001d003655_P006 | Maize | nucleus, plastid | 28.37 | 13.9 |
| Zm00001d022176_P002 | Maize | nucleus | 28.08 | 11.19 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.1.5 | Gene3D:3.40.50.300 | UniProt:A0A1D6PZ80 | ProteinID:AQK51736.1 | InterPro:DNA/RNA_helicase_DEAH_CS |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF117 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 |
| UniParc:UPI00084385DB | EnsemblPlantsGene:Zm00001d049980 | EnsemblPlants:Zm00001d049980_P001 | EnsemblPlants:Zm00001d049980_T001 | SEG:seg | : |
Description
Putative RNA helicase family protein
Coordinates
chr4:+:56787786..56805442
Molecular Weight (calculated)
79467.8 Da
IEP (calculated)
5.116
GRAVY (calculated)
-0.460
Length
698 amino acids
Sequence
(BLAST)
(BLAST)
001: MERQLSKEEQ VEVWYAERNR KFSRQAYLQK RRDKKIEEIR DEILDHQYIF QDLKLTEAEE KELRYKMKIY DLVKEHVETP DDVGAYKMPE AYDMGENVNQ
101: EKRFAVAMQR YNRDPKANDK MNPFAEQEAW EEHQIETDSE EIYVLVPGKS KLQFGSKDKK PSSDEYQYVF EDTIDFVKSS VIEGTQPEDD SDKEDVEAKD
201: ILKRELQDER KTLPIFKFRD ELLKAVEEYQ VIVIVGETGS GKTTQIPQFL HESGYTAKGK VACTQPRRVA AMSVAARVSQ EMGVKLGHEV GYSIRFEDCT
301: SDKTIIKYMT DGMLLREFLG EPDLASYSVV MVDEAHERTL STDILFGLVK DISRFRPDLK LLISSATLDA EKFSDYFDSA PIFKIPGRRY PVEIHYTKAP
401: EADYIDAAIV TVLQIHVTQS PGDILVFLTG QEEIETVDEI LKHRTRGLGT KISELIICPI YANLPTELQA KIFEPTPEGA RKVVLATNIA ETSLTIDGIK
501: YVIDPGFCKI KSYNPRTGME SLLINPISKA SANQRAGRSG RTGPGKCFRL YTSYNYMHDL EDNTVPEIQR TNLANVVLTL KSLGIHDLVN FDFMDPPPSE
601: ALLRALEQLF ALSALNSRGE LTKTGRRMAE FPLDPMLSKM IVASEKYKCS DEIISIASML SIGNSIFYRP KDKQVHADNA RLNFHTGNVG DHIALLNV
101: EKRFAVAMQR YNRDPKANDK MNPFAEQEAW EEHQIETDSE EIYVLVPGKS KLQFGSKDKK PSSDEYQYVF EDTIDFVKSS VIEGTQPEDD SDKEDVEAKD
201: ILKRELQDER KTLPIFKFRD ELLKAVEEYQ VIVIVGETGS GKTTQIPQFL HESGYTAKGK VACTQPRRVA AMSVAARVSQ EMGVKLGHEV GYSIRFEDCT
301: SDKTIIKYMT DGMLLREFLG EPDLASYSVV MVDEAHERTL STDILFGLVK DISRFRPDLK LLISSATLDA EKFSDYFDSA PIFKIPGRRY PVEIHYTKAP
401: EADYIDAAIV TVLQIHVTQS PGDILVFLTG QEEIETVDEI LKHRTRGLGT KISELIICPI YANLPTELQA KIFEPTPEGA RKVVLATNIA ETSLTIDGIK
501: YVIDPGFCKI KSYNPRTGME SLLINPISKA SANQRAGRSG RTGPGKCFRL YTSYNYMHDL EDNTVPEIQR TNLANVVLTL KSLGIHDLVN FDFMDPPPSE
601: ALLRALEQLF ALSALNSRGE LTKTGRRMAE FPLDPMLSKM IVASEKYKCS DEIISIASML SIGNSIFYRP KDKQVHADNA RLNFHTGNVG DHIALLNV
0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM
Arabidopsis Description
ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.