Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40514 | Canola | nucleus | 95.46 | 95.24 |
| Bra038498.1-P | Field mustard | nucleus | 98.14 | 93.56 |
| AT4G16680.2 | Thale cress | nucleus | 73.46 | 79.27 |
| Os08t0335000-00 | Rice | cytosol, nucleus | 28.41 | 66.48 |
| CDY37024 | Canola | cytosol, mitochondrion | 24.1 | 63.89 |
| GSMUA_Achr4P23370_001 | Banana | nucleus | 52.27 | 59.87 |
| PGSC0003DMT400005723 | Potato | nucleus | 56.34 | 58.88 |
| Zm00001d049980_P001 | Maize | plasma membrane | 47.03 | 57.88 |
| Solyc12g017700.1.1 | Tomato | nucleus | 56.46 | 54.74 |
| CDY32278 | Canola | endoplasmic reticulum | 62.75 | 51.63 |
| CDY26898 | Canola | nucleus | 62.75 | 51.63 |
| KXG30390 | Sorghum | nucleus | 60.88 | 50.0 |
| EES02741 | Sorghum | nucleus | 60.42 | 49.62 |
| TraesCS4B01G374800.1 | Wheat | nucleus | 60.42 | 49.62 |
| TraesCS4D01G362600.1 | Wheat | nucleus | 60.3 | 49.52 |
| CDY68405 | Canola | nucleus | 38.42 | 49.25 |
| CDX74061 | Canola | cytosol | 17.81 | 47.66 |
| CDY23338 | Canola | cytosol | 23.05 | 46.92 |
| CDX76626 | Canola | nucleus | 38.77 | 46.38 |
| CDY11413 | Canola | nucleus | 38.77 | 46.38 |
| HORVU4Hr1G088270.17 | Barley | mitochondrion | 58.09 | 46.2 |
| CDX74059 | Canola | nucleus | 14.09 | 45.83 |
| CDX95715 | Canola | cytosol | 38.42 | 45.52 |
| CDX83337 | Canola | cytosol | 38.3 | 45.5 |
| CDX78859 | Canola | nucleus | 36.09 | 44.41 |
| CDX99466 | Canola | nucleus | 36.09 | 44.29 |
| CDY36075 | Canola | nucleus | 32.71 | 41.69 |
| CDY34567 | Canola | nucleus | 32.13 | 41.63 |
| CDX85017 | Canola | cytosol, plastid | 34.58 | 41.14 |
| CDY16154 | Canola | nucleus, plastid | 34.11 | 40.53 |
| CDY11762 | Canola | nucleus | 33.06 | 40.34 |
| CDX90112 | Canola | nucleus | 33.06 | 40.28 |
| CDY02818 | Canola | nucleus | 30.85 | 39.91 |
| CDY32702 | Canola | nucleus | 32.13 | 39.88 |
| CDX83624 | Canola | nucleus | 46.22 | 35.61 |
| CDY13640 | Canola | nucleus | 46.22 | 35.29 |
| CDY23802 | Canola | nucleus | 18.98 | 31.05 |
| CDX91491 | Canola | nucleus | 2.21 | 30.16 |
| CDY51663 | Canola | nucleus | 2.21 | 30.16 |
| CDX85676 | Canola | nucleus | 39.81 | 27.4 |
| CDX91151 | Canola | nucleus | 39.7 | 27.3 |
| CDX79642 | Canola | nucleus, vacuole | 27.47 | 22.8 |
| CDX84588 | Canola | plastid, vacuole | 27.36 | 22.71 |
| CDY48353 | Canola | nucleus | 29.34 | 20.61 |
| CDX93688 | Canola | plastid | 28.17 | 20.51 |
| CDY40601 | Canola | nucleus, plastid | 28.17 | 20.49 |
| CDY34159 | Canola | nucleus | 29.45 | 20.45 |
| CDY57512 | Canola | nucleus | 27.01 | 20.44 |
| CDY17694 | Canola | nucleus | 27.01 | 20.44 |
| CDX98799 | Canola | mitochondrion | 26.89 | 20.02 |
| CDX70187 | Canola | mitochondrion | 26.89 | 19.98 |
| CDY10756 | Canola | nucleus | 23.98 | 18.92 |
| CDY10215 | Canola | nucleus | 24.56 | 16.43 |
| CDX97797 | Canola | nucleus | 24.56 | 16.34 |
| CDY39917 | Canola | nucleus | 26.78 | 16.28 |
| CDY29164 | Canola | nucleus | 26.78 | 16.15 |
| CDY29644 | Canola | nucleus | 24.33 | 15.99 |
| CDY63687 | Canola | nucleus, plastid | 19.79 | 15.32 |
| CDX78376 | Canola | plastid | 27.94 | 13.66 |
| CDX81170 | Canola | plastid | 27.94 | 13.61 |
| CDX96996 | Canola | nucleus | 27.47 | 13.34 |
| CDX69841 | Canola | plastid | 27.24 | 13.24 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.1.5 | Gene3D:3.40.50.300 | GO:A0A078J6N3 | UniProt:A0A078J6N3 | EnsemblPlants:CDY60185 |
| ProteinID:CDY60185 | ProteinID:CDY60185.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00028273001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 |
| PIRSF:PIRSF005496 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF117 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI0004EE3087 | SEG:seg |
Description
BnaA01g35370DBnaA01g35370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6N3]
Coordinates
chrLK033852:+:5739..8572
Molecular Weight (calculated)
98326.0 Da
IEP (calculated)
8.885
GRAVY (calculated)
-0.575
Length
859 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMHSKVQVR SSSVVDMDLD VIEETVDRSV SEEKPSLRSV SVKFKLSIAK KSFRKRSREV SEKDDEDEEE DGRVLGNYEI ARLREESRRE YLKKRENKKV
101: EEFKEQIPDA YDQEGGVDQR KRFAVARQRY GEVTREKEAW EDHQAQKATV RFGSKDKKQV CDGYEFVFDE VTSFVETSVE AEKDRGYDER RVAKDDRKML
201: PIYAYRDELL KLVEENQVLV IVGETGSGKT TQIPQYLQEA GYTKRGKIGC TQPRRVAAMS VASRVAQELG VKLGREVGYS IRFEDCTSEK TVIKYMTDGM
301: LLRELLIEPK LDSYSVIIVD EAHERTLSTD ILFGLVKDLA KARPDLRLII SSATLEAKKF SEYFDSARIY MIPGRRYPVE KLFQRCPEPD RLETAVRTVF
401: QIHQREPLGD VLVFLTGQEE IETAETKLKE MMKDLGSKSS EIIICPIYSN LPTELQAKVF DPAPKGTRKV VLATNIAETS LTIEGIRYVV DPGYCKINSY
501: NPKTGMESLL ETPISKASAE QRAGRSGRTG PGKCFRLYNV KDLEPTTIPE VQRANLASVV LTLKSLGIDD VFNFDFMDPP PEKSLMKALE LLYALGALDG
601: KSDITKLGER MVEFPVDPML SKMIVGSEKY KCSAEIITIA AMLSTGSSIF YRPTRNQQYL ADNARMSFYT DNAGDHIALL RVYNSWKEMN YSSQWCYENY
701: IQSKSMRRAR DIREQLAELL KRIGLELTSN SEDLDAVKKA ILAGFFPHSA KLQKDGSYRR VREPQTVYVH PSSGLFGASP KKWLVYHELV LTTKEYMRHT
801: TEMKPEWLVE IAPHYYKLKD IEGTRTKKSQ SRNIRSLMLM VDTNKKAKRK VDTNKKAKR
101: EEFKEQIPDA YDQEGGVDQR KRFAVARQRY GEVTREKEAW EDHQAQKATV RFGSKDKKQV CDGYEFVFDE VTSFVETSVE AEKDRGYDER RVAKDDRKML
201: PIYAYRDELL KLVEENQVLV IVGETGSGKT TQIPQYLQEA GYTKRGKIGC TQPRRVAAMS VASRVAQELG VKLGREVGYS IRFEDCTSEK TVIKYMTDGM
301: LLRELLIEPK LDSYSVIIVD EAHERTLSTD ILFGLVKDLA KARPDLRLII SSATLEAKKF SEYFDSARIY MIPGRRYPVE KLFQRCPEPD RLETAVRTVF
401: QIHQREPLGD VLVFLTGQEE IETAETKLKE MMKDLGSKSS EIIICPIYSN LPTELQAKVF DPAPKGTRKV VLATNIAETS LTIEGIRYVV DPGYCKINSY
501: NPKTGMESLL ETPISKASAE QRAGRSGRTG PGKCFRLYNV KDLEPTTIPE VQRANLASVV LTLKSLGIDD VFNFDFMDPP PEKSLMKALE LLYALGALDG
601: KSDITKLGER MVEFPVDPML SKMIVGSEKY KCSAEIITIA AMLSTGSSIF YRPTRNQQYL ADNARMSFYT DNAGDHIALL RVYNSWKEMN YSSQWCYENY
701: IQSKSMRRAR DIREQLAELL KRIGLELTSN SEDLDAVKKA ILAGFFPHSA KLQKDGSYRR VREPQTVYVH PSSGLFGASP KKWLVYHELV LTTKEYMRHT
801: TEMKPEWLVE IAPHYYKLKD IEGTRTKKSQ SRNIRSLMLM VDTNKKAKRK VDTNKKAKR
001: MREVIEFRYK RALYELVKKT EDDDDVEGYR FPDAYDQEGC IDQKKRFDVA KERYCERRRS GRVVTEQEAW EDHQAQKARV RFGAKDKKQV VDGYEFVFDD
101: LTGFVEESSE AETGKHRGCY SKTAAEKARE GREFLPIHGY REELLKLIEE NQVLVIVGET GSGKTTQIPQ YLQEAGYTKR GKIGCTQPRR VAAMSVASRV
201: AQEVGVKLGH EVGYSIRFED CTSEKTVIKY MTDGMLLREL LIEPKLDSYS VIIIDEAHER TLSTDILFAL VKDVAKVRPD LRLIISSATL EAKKFSEYFD
301: SARIYLIPGR RYPVEKLFRK CPEPDYLETV IRTVVQIHQT EAIGDILVFL TGQEEIETVE TNLKRRMMDL GTKGSEIIIC PIYSNLPTPL QAKVFEPAPK
401: GTRKVVLATN IAETSLTIDG VKYVIDPGYC KINSYNPRTG MESLLVTPIS KASAAQRAGR SGRTGPGKCF RLYNIKDLEP TTIPEIQRAN LASVVLTLKS
501: LGIQDVFNFD FMDPPPENAL LKALELLYAL GALDEIGEIT KVGERMVEFP VDPMLSKMIV GSEKYKCSKE IITIAAMLSV GNSVFYRPKN QQVFADKARM
601: DFYEDTENVG DHIALLRVYN SWKEENYSTQ WCCEKFIQSK SMKRARDIRD QLLGLLNKIG VELTSNPNDL DAIKKAILAG FFPHSAKLQK NGSYRRVKEP
701: QTVYVHPNSG LFGASPSKWL VYHELVLTTK EYMRHTTEMK PEWLIEIAPH YYKLKDIEDT RPKKTQRRIE EASTSKVDTN KKTRTSKVDT NKKSKR
101: LTGFVEESSE AETGKHRGCY SKTAAEKARE GREFLPIHGY REELLKLIEE NQVLVIVGET GSGKTTQIPQ YLQEAGYTKR GKIGCTQPRR VAAMSVASRV
201: AQEVGVKLGH EVGYSIRFED CTSEKTVIKY MTDGMLLREL LIEPKLDSYS VIIIDEAHER TLSTDILFAL VKDVAKVRPD LRLIISSATL EAKKFSEYFD
301: SARIYLIPGR RYPVEKLFRK CPEPDYLETV IRTVVQIHQT EAIGDILVFL TGQEEIETVE TNLKRRMMDL GTKGSEIIIC PIYSNLPTPL QAKVFEPAPK
401: GTRKVVLATN IAETSLTIDG VKYVIDPGYC KINSYNPRTG MESLLVTPIS KASAAQRAGR SGRTGPGKCF RLYNIKDLEP TTIPEIQRAN LASVVLTLKS
501: LGIQDVFNFD FMDPPPENAL LKALELLYAL GALDEIGEIT KVGERMVEFP VDPMLSKMIV GSEKYKCSKE IITIAAMLSV GNSVFYRPKN QQVFADKARM
601: DFYEDTENVG DHIALLRVYN SWKEENYSTQ WCCEKFIQSK SMKRARDIRD QLLGLLNKIG VELTSNPNDL DAIKKAILAG FFPHSAKLQK NGSYRRVKEP
701: QTVYVHPNSG LFGASPSKWL VYHELVLTTK EYMRHTTEMK PEWLIEIAPH YYKLKDIEDT RPKKTQRRIE EASTSKVDTN KKTRTSKVDT NKKSKR
Arabidopsis Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G16680]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.