Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90112 | Canola | nucleus | 99.15 | 99.01 |
| AT1G27900.1 | Thale cress | nucleus | 91.62 | 92.14 |
| PGSC0003DMT400038620 | Potato | cytosol, nucleus, plastid | 40.91 | 82.52 |
| KRH58751 | Soybean | nucleus | 76.42 | 77.19 |
| VIT_01s0010g02780.t01 | Wine grape | nucleus | 69.6 | 76.56 |
| Solyc05g015040.2.1 | Tomato | nucleus | 75.71 | 76.14 |
| TraesCS4D01G074200.1 | Wheat | nucleus | 71.59 | 71.49 |
| TraesCS4B01G075500.1 | Wheat | nucleus | 71.59 | 71.49 |
| TraesCS4A01G239500.2 | Wheat | nucleus | 71.45 | 71.35 |
| Os11t0310800-01 | Rice | nucleus | 71.45 | 71.05 |
| EER87951 | Sorghum | nucleus, plastid | 70.45 | 70.35 |
| Zm00001d045147_P015 | Maize | nucleus | 70.31 | 70.11 |
| GSMUA_Achr2P20940_001 | Banana | nucleus | 61.51 | 64.53 |
| CDX74061 | Canola | cytosol | 20.31 | 44.55 |
| CDX74059 | Canola | nucleus | 15.62 | 41.67 |
| CDY68405 | Canola | nucleus | 38.07 | 40.0 |
| CDX76626 | Canola | nucleus | 39.77 | 39.0 |
| CDY11413 | Canola | nucleus | 39.35 | 38.58 |
| CDX95715 | Canola | cytosol | 38.92 | 37.79 |
| CDX83337 | Canola | cytosol | 38.78 | 37.76 |
| CDY23338 | Canola | cytosol | 22.44 | 37.44 |
| CDY34567 | Canola | nucleus | 34.94 | 37.1 |
| CDY36075 | Canola | nucleus | 35.09 | 36.65 |
| CDY37024 | Canola | cytosol, mitochondrion | 16.76 | 36.42 |
| CDX99466 | Canola | nucleus | 35.65 | 35.86 |
| CDX78859 | Canola | nucleus | 35.51 | 35.82 |
| CDX85017 | Canola | cytosol, plastid | 36.51 | 35.6 |
| CDY16154 | Canola | nucleus, plastid | 36.08 | 35.13 |
| CDY32702 | Canola | nucleus | 33.24 | 33.81 |
| CDY02818 | Canola | nucleus | 31.39 | 33.28 |
| CDY60185 | Canola | nucleus | 40.34 | 33.06 |
| CDY40514 | Canola | nucleus | 40.2 | 32.87 |
| CDY26898 | Canola | nucleus | 40.34 | 27.2 |
| CDY32278 | Canola | endoplasmic reticulum | 40.34 | 27.2 |
| CDX83624 | Canola | nucleus | 41.48 | 26.19 |
| CDY13640 | Canola | nucleus | 41.48 | 25.96 |
| CDY23802 | Canola | nucleus | 18.04 | 24.19 |
| CDY51663 | Canola | nucleus | 2.13 | 23.81 |
| CDX91491 | Canola | nucleus | 2.13 | 23.81 |
| CDX85676 | Canola | nucleus | 40.2 | 22.68 |
| CDX91151 | Canola | nucleus | 40.2 | 22.66 |
| CDX84588 | Canola | plastid, vacuole | 29.26 | 19.9 |
| CDX79642 | Canola | nucleus, vacuole | 29.26 | 19.9 |
| CDY17694 | Canola | nucleus | 30.4 | 18.85 |
| CDY57512 | Canola | nucleus | 30.11 | 18.68 |
| CDY48353 | Canola | nucleus | 31.96 | 18.4 |
| CDX93688 | Canola | plastid | 30.68 | 18.31 |
| CDY40601 | Canola | nucleus, plastid | 30.68 | 18.29 |
| CDY34159 | Canola | nucleus | 31.82 | 18.11 |
| CDX98799 | Canola | mitochondrion | 29.4 | 17.94 |
| CDX70187 | Canola | mitochondrion | 29.4 | 17.91 |
| CDY10756 | Canola | nucleus | 27.56 | 17.81 |
| CDX97797 | Canola | nucleus | 27.98 | 15.26 |
| CDY29644 | Canola | nucleus | 27.98 | 15.07 |
| CDY10215 | Canola | nucleus | 26.28 | 14.41 |
| CDY63687 | Canola | nucleus, plastid | 22.3 | 14.14 |
| CDY39917 | Canola | nucleus | 28.27 | 14.08 |
| CDY29164 | Canola | nucleus | 28.27 | 13.97 |
| CDX81170 | Canola | plastid | 31.96 | 12.76 |
| CDX78376 | Canola | plastid | 31.53 | 12.64 |
| CDX96996 | Canola | nucleus | 31.68 | 12.61 |
| CDX69841 | Canola | plastid | 31.39 | 12.51 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078FFJ4 | UniProt:A0A078FFJ4 | InterPro:AAA+_ATPase |
| EnsemblPlants:CDY11762 | ProteinID:CDY11762 | ProteinID:CDY11762.1 | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| EnsemblPlantsGene:GSBRNA2T00049982001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | PFAM:PF13401 | ScanProsite:PS00690 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF131 | SMART:SM00382 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI0004EF4A64 | SEG:seg | : |
Description
BnaC03g58160DBnaC03g58160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFJ4]
Coordinates
chrLK032014:+:152266..156601
Molecular Weight (calculated)
78959.0 Da
IEP (calculated)
8.228
GRAVY (calculated)
-0.329
Length
704 amino acids
Sequence
(BLAST)
(BLAST)
001: MANLPILQFE EKIVETVENN PVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAVTQPRRV AAVSVARRVA QELDVNLGED VGYAIRFEDR TSSKTRIKYL
101: TDGVLLREIL SNPMLDDYSV IILDEAHERS LNTDILLGLM KRLVRIRSSN FKVLITSATL DGEKVSRFFS GCPVLNVPGK LYPVEILYSK ERPGSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SKLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVAT NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMYSLDVTQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDLLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYLIDAI DENGAITNIG RTMSELPLEP SLSRTLIEAN ESGCLSQALT VVAMLSAETT LLPGRSKPNE KKRKRDEESN LPDGSGFGDH IQLLQIFECW
501: DSNNYDIRWC KENDLQVRGM VFVRDVRRQL CQIMQKISKD RLEVGARGRK SSSREEYRKL RKALCVGNAN QVAERMLRHN GFRTLTFKPQ LVQVHPASVL
601: STDQDGMLPN YVVYHELIST TRPFMRNVCS VEMSWVAPIK RKIEKLNVRK LSGGPDNSFK EPGEKKSTEL STNTNTAETP TVSENVESRI EAARERFLAR
701: KGQK
101: TDGVLLREIL SNPMLDDYSV IILDEAHERS LNTDILLGLM KRLVRIRSSN FKVLITSATL DGEKVSRFFS GCPVLNVPGK LYPVEILYSK ERPGSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SKLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVAT NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMYSLDVTQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDLLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYLIDAI DENGAITNIG RTMSELPLEP SLSRTLIEAN ESGCLSQALT VVAMLSAETT LLPGRSKPNE KKRKRDEESN LPDGSGFGDH IQLLQIFECW
501: DSNNYDIRWC KENDLQVRGM VFVRDVRRQL CQIMQKISKD RLEVGARGRK SSSREEYRKL RKALCVGNAN QVAERMLRHN GFRTLTFKPQ LVQVHPASVL
601: STDQDGMLPN YVVYHELIST TRPFMRNVCS VEMSWVAPIK RKIEKLNVRK LSGGPDNSFK EPGEKKSTEL STNTNTAETP TVSENVESRI EAARERFLAR
701: KGQK
001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.