Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51663 | Canola | nucleus | 5.6 | 100.0 |
| CDX83624 | Canola | nucleus | 98.22 | 99.1 |
| CDX91491 | Canola | nucleus | 5.51 | 98.41 |
| Bra025211.1-P | Field mustard | nucleus | 99.02 | 95.13 |
| CDY23338 | Canola | cytosol | 35.47 | 94.55 |
| Os02t0301500-01 | Rice | nucleus | 45.69 | 94.14 |
| PGSC0003DMT400084916 | Potato | nucleus | 65.33 | 91.76 |
| AT3G26560.1 | Thale cress | nucleus | 92.18 | 88.78 |
| VIT_08s0056g00470.t01 | Wine grape | nucleus | 85.33 | 81.7 |
| GSMUA_Achr10P... | Banana | nucleus | 68.98 | 79.59 |
| Solyc01g110990.2.1 | Tomato | nucleus | 78.31 | 79.3 |
| Solyc07g039550.2.1 | Tomato | nucleus | 82.84 | 78.32 |
| PGSC0003DMT400056692 | Potato | nucleus | 77.69 | 76.6 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 81.69 | 74.35 |
| EER95349 | Sorghum | nucleus | 81.96 | 74.24 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 80.8 | 73.66 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 80.53 | 73.42 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 80.53 | 72.95 |
| EES15324 | Sorghum | nucleus | 68.8 | 72.27 |
| Os06t0343100-01 | Rice | nucleus | 69.51 | 72.14 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 67.82 | 70.91 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 68.0 | 70.7 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 80.62 | 70.36 |
| Zm00001d031581_P002 | Maize | nucleus | 68.27 | 58.01 |
| CDY11413 | Canola | nucleus | 31.82 | 49.86 |
| CDY68405 | Canola | nucleus | 29.69 | 49.85 |
| CDX76626 | Canola | nucleus | 31.73 | 49.72 |
| CDX95715 | Canola | cytosol | 31.91 | 49.52 |
| CDX83337 | Canola | cytosol | 31.82 | 49.52 |
| CDX74061 | Canola | cytosol | 14.04 | 49.22 |
| CDY37024 | Canola | cytosol, mitochondrion | 13.96 | 48.46 |
| CDX74059 | Canola | nucleus | 11.02 | 46.97 |
| CDY60185 | Canola | nucleus | 35.29 | 46.22 |
| CDY40514 | Canola | nucleus | 34.93 | 45.64 |
| CDY34567 | Canola | nucleus | 26.58 | 45.1 |
| CDY36075 | Canola | nucleus | 26.84 | 44.81 |
| CDX99466 | Canola | nucleus | 27.29 | 43.86 |
| CDX78859 | Canola | nucleus | 27.11 | 43.7 |
| CDX85017 | Canola | cytosol, plastid | 27.29 | 42.52 |
| CDY16154 | Canola | nucleus, plastid | 27.11 | 42.19 |
| CDY11762 | Canola | nucleus | 25.96 | 41.48 |
| CDY32702 | Canola | nucleus | 25.51 | 41.47 |
| CDX90112 | Canola | nucleus | 25.96 | 41.42 |
| CDY02818 | Canola | nucleus | 24.36 | 41.27 |
| CDY32278 | Canola | endoplasmic reticulum | 37.42 | 40.33 |
| CDY26898 | Canola | nucleus | 37.33 | 40.23 |
| CDY23802 | Canola | nucleus | 17.78 | 38.1 |
| CDX85676 | Canola | nucleus | 38.13 | 34.38 |
| CDX91151 | Canola | nucleus | 37.96 | 34.19 |
| CDX79642 | Canola | nucleus, vacuole | 22.84 | 24.83 |
| CDX84588 | Canola | plastid, vacuole | 22.67 | 24.64 |
| CDY40601 | Canola | nucleus, plastid | 23.2 | 22.1 |
| CDX70187 | Canola | mitochondrion | 22.67 | 22.06 |
| CDX93688 | Canola | plastid | 23.11 | 22.03 |
| CDX98799 | Canola | mitochondrion | 22.58 | 22.01 |
| CDY48353 | Canola | nucleus | 23.73 | 21.83 |
| CDY17694 | Canola | nucleus | 21.87 | 21.67 |
| CDY57512 | Canola | nucleus | 21.87 | 21.67 |
| CDY34159 | Canola | nucleus | 23.64 | 21.5 |
| CDY10756 | Canola | nucleus | 18.84 | 19.47 |
| CDY39917 | Canola | nucleus | 22.4 | 17.83 |
| CDY29164 | Canola | nucleus | 22.4 | 17.7 |
| CDY63687 | Canola | nucleus, plastid | 16.89 | 17.12 |
| CDX97797 | Canola | nucleus | 19.2 | 16.73 |
| CDY29644 | Canola | nucleus | 19.29 | 16.6 |
| CDY10215 | Canola | nucleus | 18.4 | 16.12 |
| CDX69841 | Canola | plastid | 23.38 | 14.88 |
| CDX81170 | Canola | plastid | 23.2 | 14.8 |
| CDX78376 | Canola | plastid | 23.02 | 14.74 |
| CDX96996 | Canola | nucleus | 22.84 | 14.53 |
Protein Annotations
| Gene3D:2.40.50.140 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078FGU3 | UniProt:A0A078FGU3 | EnsemblPlants:CDY13640 |
| ProteinID:CDY13640 | ProteinID:CDY13640.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00078058001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR003029 | InterPro:IPR014001 | InterPro:NA-bd_OB-fold | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF00575 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS50126 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF120 | InterPro:S1_dom | InterPro:S1_domain |
| SMART:SM00316 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF50249 | SUPFAM:SSF52540 |
| UniParc:UPI0004EDE16D | SEG:seg | : | : | : | : |
Description
BnaA06g32830DBnaA06g32830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGU3]
Coordinates
chrLK032037:-:420165..424417
Molecular Weight (calculated)
128474.0 Da
IEP (calculated)
7.160
GRAVY (calculated)
-0.646
Length
1125 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEKKELNKLN HLSLVSNICN ELETHLGQAP KDLAEYIIHL GRNSETADEL DKKLKKDGAE LPDYFVRSLL TVIHGIYPPQ PKSDDVEEDG GEKERFKGLA
0101: IRDTKDKERQ KEEDRNRRGS GRDRDRDDRR DRHRDRNRGD EDDRRRDRHR GRDHRGVQDE YTGANEPELY QVYKGRVTRV MDSGCFVQFD RFRGKEGLVH
0201: VSQMATRRVD RAESVVKRDM EVYVKVVSIK EGGKYSLSMK DVDQNTGRDL IPLKKPSDDD DLGRSNPSYR TKDGQVTKTG ISGIRIVEES NVAPSRRPLK
0301: KMSSPERWEA KQLIAAGALK ASEFPDYDED GDGMLYQEEG AEEELEIEMN EEEPAFLQGQ TRYSVDMSPV KIFKNPEGSL SRAAALQSAL TKERREMREQ
0401: QQRTMLDSIP KDLNRPWEDP MPETGERHLA QELRGVGLSA YDMPEWKKDA FGKTPTFGQR SKLSIQEQRE SLPIYKLKKE LIQAVHDNQV LVVIGETGSG
0501: KTTQVTQYLA EAGYTTKGKI GCTQPRRVAA MSVAKRVAEE FGCRLGEEVG YAIRFEDCTG PDTVIKYMTD GMLLREILID ENLSQYSVIM LDEAHERTIH
0601: TDVLFGLLKK LLKRRLDLRL IVTSATLDAE KFSGYFFNCN IFTIPGRTFP VEILYTKQPE SDYLDAALIT VLQIHLTEPE GDILLFLTGQ EEIDSACQSL
0701: YERMKNLGKN VPELIILPVY SALPSEMQSR IFDPPPPGTR KVVVATNIAE ASLTIDGIYY VVDPGFAKQN VYNPKQGLES LVITPISQAS AKQRAGRAGR
0801: TGPGKCYRLY TESAYRNEMP PTSIPEIQRI NLGMTTLTMK AMGINDLLSF DFMDPPQPQA LISAMEQLYS LGALDEEGLL TKLGRKMAEF PLEPPLSKML
0901: LASVDLGCSD EILTMIAMIQ TGNIFYRPRE KQAQADQKRA KFFQPEGDHL TLLAVYEAWK AKNFSGPWCF ENFIQSRSLR RAQDVRKQLL SIMDKYKLDV
1001: VSAGKNFTKI RKAITAGFFF HGARKDPQEG YRTLVENQPV YIHPSSALFQ RQPDWVIYHD LVMTTKEYMR EVTVIDPKWL VELAPRFFKV ADPTHMSKRK
1101: RQERIEPLYD RYHEPNSWRL SKRRA
0101: IRDTKDKERQ KEEDRNRRGS GRDRDRDDRR DRHRDRNRGD EDDRRRDRHR GRDHRGVQDE YTGANEPELY QVYKGRVTRV MDSGCFVQFD RFRGKEGLVH
0201: VSQMATRRVD RAESVVKRDM EVYVKVVSIK EGGKYSLSMK DVDQNTGRDL IPLKKPSDDD DLGRSNPSYR TKDGQVTKTG ISGIRIVEES NVAPSRRPLK
0301: KMSSPERWEA KQLIAAGALK ASEFPDYDED GDGMLYQEEG AEEELEIEMN EEEPAFLQGQ TRYSVDMSPV KIFKNPEGSL SRAAALQSAL TKERREMREQ
0401: QQRTMLDSIP KDLNRPWEDP MPETGERHLA QELRGVGLSA YDMPEWKKDA FGKTPTFGQR SKLSIQEQRE SLPIYKLKKE LIQAVHDNQV LVVIGETGSG
0501: KTTQVTQYLA EAGYTTKGKI GCTQPRRVAA MSVAKRVAEE FGCRLGEEVG YAIRFEDCTG PDTVIKYMTD GMLLREILID ENLSQYSVIM LDEAHERTIH
0601: TDVLFGLLKK LLKRRLDLRL IVTSATLDAE KFSGYFFNCN IFTIPGRTFP VEILYTKQPE SDYLDAALIT VLQIHLTEPE GDILLFLTGQ EEIDSACQSL
0701: YERMKNLGKN VPELIILPVY SALPSEMQSR IFDPPPPGTR KVVVATNIAE ASLTIDGIYY VVDPGFAKQN VYNPKQGLES LVITPISQAS AKQRAGRAGR
0801: TGPGKCYRLY TESAYRNEMP PTSIPEIQRI NLGMTTLTMK AMGINDLLSF DFMDPPQPQA LISAMEQLYS LGALDEEGLL TKLGRKMAEF PLEPPLSKML
0901: LASVDLGCSD EILTMIAMIQ TGNIFYRPRE KQAQADQKRA KFFQPEGDHL TLLAVYEAWK AKNFSGPWCF ENFIQSRSLR RAQDVRKQLL SIMDKYKLDV
1001: VSAGKNFTKI RKAITAGFFF HGARKDPQEG YRTLVENQPV YIHPSSALFQ RQPDWVIYHD LVMTTKEYMR EVTVIDPKWL VELAPRFFKV ADPTHMSKRK
1101: RQERIEPLYD RYHEPNSWRL SKRRA
0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM
Arabidopsis Description
ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.