Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51663 | Canola | nucleus | 6.05 | 93.65 |
| CDX91491 | Canola | nucleus | 5.95 | 92.06 |
| CDY23338 | Canola | cytosol | 36.92 | 85.31 |
| Os02t0301500-01 | Rice | nucleus | 43.79 | 78.21 |
| PGSC0003DMT400084916 | Potato | nucleus | 63.59 | 77.4 |
| Bra040091.1-P | Field mustard | nucleus | 58.26 | 71.81 |
| VIT_08s0056g00470.t01 | Wine grape | nucleus | 86.46 | 71.74 |
| KRH05918 | Soybean | nucleus | 87.18 | 71.01 |
| KRH17401 | Soybean | nucleus | 87.49 | 70.91 |
| KRG97372 | Soybean | nucleus | 69.03 | 69.6 |
| CDX83624 | Canola | nucleus | 79.28 | 69.33 |
| CDY13640 | Canola | nucleus | 79.59 | 68.98 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 87.28 | 68.96 |
| Solyc07g039550.2.1 | Tomato | nucleus | 84.1 | 68.91 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 87.18 | 68.88 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 87.18 | 68.77 |
| EER95349 | Sorghum | nucleus | 87.59 | 68.76 |
| Solyc01g110990.2.1 | Tomato | nucleus | 78.05 | 68.5 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 86.97 | 68.28 |
| AT3G26560.1 | Thale cress | nucleus | 81.23 | 67.81 |
| PGSC0003DMT400056692 | Potato | nucleus | 78.77 | 67.31 |
| Bra025211.1-P | Field mustard | nucleus | 80.21 | 66.78 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 87.59 | 66.25 |
| EES15324 | Sorghum | nucleus | 71.28 | 64.89 |
| Os06t0343100-01 | Rice | nucleus | 71.18 | 64.02 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 68.72 | 61.92 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 68.1 | 61.71 |
| Zm00001d031581_P002 | Maize | nucleus | 70.15 | 51.66 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 15.59 | 42.7 |
| GSMUA_Achr3P12710_001 | Banana | nucleus | 30.77 | 41.32 |
| GSMUA_Achr11P... | Banana | nucleus | 14.87 | 38.26 |
| GSMUA_Achr4P23370_001 | Banana | nucleus | 29.33 | 38.13 |
| GSMUA_Achr3P24350_001 | Banana | endoplasmic reticulum, vacuole | 25.33 | 34.74 |
| GSMUA_Achr2P20940_001 | Banana | nucleus | 22.36 | 32.49 |
| GSMUA_Achr5P05110_001 | Banana | nucleus | 28.62 | 27.46 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 11.38 | 24.4 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 22.15 | 20.09 |
| GSMUA_Achr4P07530_001 | Banana | mitochondrion | 22.15 | 18.54 |
| GSMUA_Achr8P12540_001 | Banana | nucleus | 9.44 | 16.67 |
| GSMUA_Achr3P20920_001 | Banana | mitochondrion, nucleus | 21.33 | 16.63 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 16.72 | 14.48 |
| GSMUA_Achr6P17860_001 | Banana | nucleus | 20.82 | 14.27 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 16.21 | 12.82 |
Protein Annotations
| Gene3D:2.40.50.140 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr10G26190_001 | EnsemblPlants:GSMUA_Achr10P26190_001 | EnsemblPlants:GSMUA_Achr10T26190_001 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:IPR003029 | InterPro:IPR014001 | UniProt:M0RLJ3 | InterPro:NA-bd_OB-fold | InterPro:P-loop_NTPase |
| PFAM:PF00575 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS50126 | PFscan:PS51192 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF120 | InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 | SMART:SM00487 |
| SMART:SM00847 | SUPFAM:SSF50249 | SUPFAM:SSF52540 | UniParc:UPI000295068B | SEG:seg | : |
Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Source:GMGC_GENE;Acc:GSMUA_Achr10G26190_001]
Coordinates
chr10:-:29882107..29888892
Molecular Weight (calculated)
110433.0 Da
IEP (calculated)
6.588
GRAVY (calculated)
-0.497
Length
975 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAAEVAPG DEGLKKLEYL SLVSKVCTEL ESHIGCGDKV LAEFITELGR DSETVDDFDA KLKANGAEMP DYFVRTLLTI IHAILPPRSK ASMPLPSDPQ
101: SQSKKKASAF PALSRPDDPE RAKDLRLEME KDADRKSDAG RRQHDREHDE DSKTRRNPNP NRRISDEPEL YEVYKGRISR VMDTGCFVQL TDLRGKEGLV
201: HVSQIASRRI ANAKDVVKRD QEVYVKVISV SGQKLSLSMR DVDQKTGKDL LPMKKSSEDE AYRANPARSS RRPLKRMSSP ERWEAKQLVA SGVLGVRDYP
301: MFDDDGDGLL YQEEGAEEEI EIELNEDEPA FLQGQSRFSI DMSPVKIFKN PEGSLSRAAA LQSALIKERR ELREQQQRTM LDSIPKDLNL GLSAYEMPEW
401: KKDAYGKALT FGQRSKLSIQ EQRQSLPIYK LKKELIQAVH DNQVLVVIGE TGSGKTTQVT QYLAEAGYTT RGKIGCTQPR RVAAMSVAKR VAEEFGCRLG
501: EEVGYAIRFE DCTGPETVIK YMTDGMLLRE ILVDESLSQY SVIMLDEAHE RTIHTDVLFG LLKQLILYTK QPETDYLDAA LITVLQIHLT EPEGDVLLFL
601: TGQEEIDHAC QIFEPAPPGK RKVVVATNIA EASLTIDGIY YVVDPGFAKQ NVYNPKLGLD SLSAYRNEMS PTTIPEIQRI NLGATVLNMK AMGINDLLSF
701: DFMDPPSPQA LISAMEQLYS LGALDEEGLL TKLGRKMAEF PLEPPLSKML LASVDLGCSE EILTIIAMIQ TGNIFYRPRE KQAQADQKRA KFFQPEGDHL
801: TLLAVYEAWK AKNFSGPWCF ENFVQSRSLR RAQDVRKQLL TIMDRYKLDV VSAGKNFTKI RKAITAGFFF HAARKDPQEG YRTLVENQPV YIHPSSALFQ
901: RQPDWVIYHE LVMTTKEYMR EVTVVDPKWL VELAPRFYKG ADPTKMSKRK RQERIEPLYD RYHEPNSWRL SKRRA
101: SQSKKKASAF PALSRPDDPE RAKDLRLEME KDADRKSDAG RRQHDREHDE DSKTRRNPNP NRRISDEPEL YEVYKGRISR VMDTGCFVQL TDLRGKEGLV
201: HVSQIASRRI ANAKDVVKRD QEVYVKVISV SGQKLSLSMR DVDQKTGKDL LPMKKSSEDE AYRANPARSS RRPLKRMSSP ERWEAKQLVA SGVLGVRDYP
301: MFDDDGDGLL YQEEGAEEEI EIELNEDEPA FLQGQSRFSI DMSPVKIFKN PEGSLSRAAA LQSALIKERR ELREQQQRTM LDSIPKDLNL GLSAYEMPEW
401: KKDAYGKALT FGQRSKLSIQ EQRQSLPIYK LKKELIQAVH DNQVLVVIGE TGSGKTTQVT QYLAEAGYTT RGKIGCTQPR RVAAMSVAKR VAEEFGCRLG
501: EEVGYAIRFE DCTGPETVIK YMTDGMLLRE ILVDESLSQY SVIMLDEAHE RTIHTDVLFG LLKQLILYTK QPETDYLDAA LITVLQIHLT EPEGDVLLFL
601: TGQEEIDHAC QIFEPAPPGK RKVVVATNIA EASLTIDGIY YVVDPGFAKQ NVYNPKLGLD SLSAYRNEMS PTTIPEIQRI NLGATVLNMK AMGINDLLSF
701: DFMDPPSPQA LISAMEQLYS LGALDEEGLL TKLGRKMAEF PLEPPLSKML LASVDLGCSE EILTIIAMIQ TGNIFYRPRE KQAQADQKRA KFFQPEGDHL
801: TLLAVYEAWK AKNFSGPWCF ENFVQSRSLR RAQDVRKQLL TIMDRYKLDV VSAGKNFTKI RKAITAGFFF HAARKDPQEG YRTLVENQPV YIHPSSALFQ
901: RQPDWVIYHE LVMTTKEYMR EVTVVDPKWL VELAPRFYKG ADPTKMSKRK RQERIEPLYD RYHEPNSWRL SKRRA
0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.