Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0736600-01 | Rice | nucleus | 61.49 | 51.97 |
| KXG30805 | Sorghum | nucleus | 61.21 | 51.57 |
| Zm00001d017967_P003 | Maize | nucleus | 60.84 | 51.13 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 59.72 | 49.88 |
| TraesCS6A01G178200.1 | Wheat | nucleus | 56.93 | 49.8 |
| TraesCS6B01G206600.1 | Wheat | nucleus | 59.35 | 49.61 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 60.19 | 48.79 |
| TraesCS6B01G329000.1 | Wheat | nucleus | 59.81 | 48.75 |
| TraesCS6A01G299400.2 | Wheat | nucleus | 59.91 | 48.57 |
| VIT_07s0005g00860.t01 | Wine grape | nucleus | 59.53 | 48.45 |
| PGSC0003DMT400000297 | Potato | nucleus | 56.0 | 45.06 |
| Solyc01g095710.2.1 | Tomato | nucleus | 55.81 | 44.74 |
| KRH76262 | Soybean | nucleus | 54.05 | 43.98 |
| AT1G33390.2 | Thale cress | nucleus | 50.6 | 43.98 |
| KRH65271 | Soybean | nucleus | 54.05 | 43.95 |
| CDY48353 | Canola | nucleus | 48.37 | 42.52 |
| CDY34159 | Canola | nucleus | 48.65 | 42.28 |
| Bra032998.1-P | Field mustard | nucleus | 48.09 | 41.79 |
| GSMUA_Achr11P... | Banana | nucleus | 12.56 | 35.62 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 10.98 | 33.15 |
| GSMUA_Achr3P12710_001 | Banana | nucleus | 21.58 | 31.96 |
| GSMUA_Achr2P20940_001 | Banana | nucleus | 18.98 | 30.4 |
| GSMUA_Achr4P23370_001 | Banana | nucleus | 19.91 | 28.53 |
| GSMUA_Achr3P24350_001 | Banana | endoplasmic reticulum, vacuole | 17.86 | 27.0 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 9.67 | 22.86 |
| GSMUA_Achr10P... | Banana | nucleus | 20.09 | 22.15 |
| GSMUA_Achr5P05110_001 | Banana | nucleus | 19.81 | 20.96 |
| GSMUA_Achr4P07530_001 | Banana | mitochondrion | 20.09 | 18.54 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 17.77 | 16.96 |
| GSMUA_Achr3P20920_001 | Banana | mitochondrion, nucleus | 19.44 | 16.71 |
| GSMUA_Achr8P12540_001 | Banana | nucleus | 8.09 | 15.76 |
| GSMUA_Achr6P17860_001 | Banana | nucleus | 20.09 | 15.18 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 16.09 | 14.04 |
| Os02t0736800-01 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS |
| InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr3G08220_001 | EnsemblPlants:GSMUA_Achr3P08220_001 | EnsemblPlants:GSMUA_Achr3T08220_001 |
| InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M0SCT9 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF99 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI000294A24B | SEG:seg | : | : |
Description
helicase domain-containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G08220_001]
Coordinates
chr3:-:5814132..5822448
Molecular Weight (calculated)
121896.0 Da
IEP (calculated)
9.296
GRAVY (calculated)
-0.392
Length
1075 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRSNVANNAD QSLDEVELLM PAGIEESWKS CDGGGSNAII LPGKKKNKLK VKSNKAKKKE IQTLSKSKQR KLRQLEEERQ KKLLQEKSIK ILEEHKIWDG
0101: AYSLLHSSGT IGRAETFKER RFRAVQISKA GLEVPEDILP FKEKHHPNVF NDDEAALEVD PIQSLRNDVG VDITLPEKCM KIDDNNHNLS IDVPLPSPKV
0201: RETNMSASAI ADQKCSSTTA SYDGYDILAQ KYQEIEGITD LTVQEHVNAT TVVHISRPRE VEEHRKDLPI IMMEQEIMEA INEHFIVILC GETGCGKTTQ
0301: VPQFLYEAGF GSSLRSDRKG IIGVTQPRRV AVLATAKRVS FELGLGLGKE VGFQVRHDKL IGKSCSIKFM TDGILLREVQ SDFLLKRYSV IILDEAHERS
0401: LNTDILIGML SRIIKLRQKL YAEQQEKILA GETISPENMV TQLRLVLMSA TLQVEDFNSN RKLFDQNLPV LEIPVRQFPV TSHFSKRTCQ DYLGQAYKKV
0501: MAIHKRLPPG GILVFVTGQR EVEFLCRKLR KASQQLTKRF SSYEDDNHSD VFSTGLFFPA ASDVENHSES GSLSAGPLYV LPLYAMLPAS SQLRVFEEVP
0601: EGERLVVVAT NVAETSLTIP GIKYVVDTGK EKIKDYNHSN GMATYEVSWI SKASAAQRAG RAGRTAPGHC YRLYSSGAFS KDEIFPKFSS PEISKIPVDG
0701: VVLLMKSMGI DKVSNFPFPT PPNSEALLEA EHCLRALEAL DIQGRLTPMG RAMAQYPMSP RHSRMLLTVI KIMRNQKGYA RANLGNQRTN NDMDLGETLD
0801: TKKDKEEKQR QKKLKAMARE AHARFCNPSS DALTIAYALW LFELEANPVI FCRDNSLHLK TMEEMSKLRK QLLQLVFHQS KFKELIGQSI LYLHRRSSVS
0901: QAAPEFLVYT ELLQMKRPYI YGVTTIKSDW LVKYASPLCT FSAPLTDPKP YYEPLSDRVL CWVSPTFGRH NWQLPLHSIP IKNDILRLSV FASALLEGNV
1001: LPCLRSVGSK IIDSRARLRD AWSKNPQFLR SEIQQWFQER FHNKFGELWE LMHIEVHHEG HELFPKRAKK ERKMK
0101: AYSLLHSSGT IGRAETFKER RFRAVQISKA GLEVPEDILP FKEKHHPNVF NDDEAALEVD PIQSLRNDVG VDITLPEKCM KIDDNNHNLS IDVPLPSPKV
0201: RETNMSASAI ADQKCSSTTA SYDGYDILAQ KYQEIEGITD LTVQEHVNAT TVVHISRPRE VEEHRKDLPI IMMEQEIMEA INEHFIVILC GETGCGKTTQ
0301: VPQFLYEAGF GSSLRSDRKG IIGVTQPRRV AVLATAKRVS FELGLGLGKE VGFQVRHDKL IGKSCSIKFM TDGILLREVQ SDFLLKRYSV IILDEAHERS
0401: LNTDILIGML SRIIKLRQKL YAEQQEKILA GETISPENMV TQLRLVLMSA TLQVEDFNSN RKLFDQNLPV LEIPVRQFPV TSHFSKRTCQ DYLGQAYKKV
0501: MAIHKRLPPG GILVFVTGQR EVEFLCRKLR KASQQLTKRF SSYEDDNHSD VFSTGLFFPA ASDVENHSES GSLSAGPLYV LPLYAMLPAS SQLRVFEEVP
0601: EGERLVVVAT NVAETSLTIP GIKYVVDTGK EKIKDYNHSN GMATYEVSWI SKASAAQRAG RAGRTAPGHC YRLYSSGAFS KDEIFPKFSS PEISKIPVDG
0701: VVLLMKSMGI DKVSNFPFPT PPNSEALLEA EHCLRALEAL DIQGRLTPMG RAMAQYPMSP RHSRMLLTVI KIMRNQKGYA RANLGNQRTN NDMDLGETLD
0801: TKKDKEEKQR QKKLKAMARE AHARFCNPSS DALTIAYALW LFELEANPVI FCRDNSLHLK TMEEMSKLRK QLLQLVFHQS KFKELIGQSI LYLHRRSSVS
0901: QAAPEFLVYT ELLQMKRPYI YGVTTIKSDW LVKYASPLCT FSAPLTDPKP YYEPLSDRVL CWVSPTFGRH NWQLPLHSIP IKNDILRLSV FASALLEGNV
1001: LPCLRSVGSK IIDSRARLRD AWSKNPQFLR SEIQQWFQER FHNKFGELWE LMHIEVHHEG HELFPKRAKK ERKMK
0001: MASVVGDDCN LDVMPPRKKK NKGSNKMQDK LNSNNNTGSK KSRKRKLNSN VNTVACKSQK RKLKKLEEDK EKEILFSKTA ELLDKYKISE DVSSLLQSSK
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
Arabidopsis Description
FAS4FAS4 [Source:UniProtKB/TrEMBL;Acc:A0A178WIP4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.