Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0621500-01 | Rice | cytosol, nucleus | 57.31 | 54.86 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 54.95 | 51.17 |
| OQU90279 | Sorghum | nucleus | 62.42 | 50.69 |
| PGSC0003DMT400041805 | Potato | nucleus | 59.25 | 45.01 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 61.61 | 43.77 |
| Zm00001d022176_P002 | Maize | nucleus | 62.09 | 43.66 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 61.85 | 43.64 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 58.77 | 43.1 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 58.52 | 43.04 |
| Solyc11g010310.1.1 | Tomato | nucleus | 59.25 | 42.82 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 58.28 | 42.04 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 59.82 | 42.02 |
| PGSC0003DMT400060759 | Potato | nucleus | 58.85 | 41.93 |
| KRG97543 | Soybean | nucleus, plastid | 58.85 | 41.93 |
| Solyc04g014210.2.1 | Tomato | nucleus | 58.85 | 41.91 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 61.44 | 41.8 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 55.03 | 41.7 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 61.2 | 41.32 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 58.2 | 41.28 |
| KRH31333 | Soybean | nucleus, plastid | 57.95 | 41.13 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 41.8 | 38.52 |
| Bra006057.1-P | Field mustard | plastid | 53.81 | 37.78 |
| CDX78376 | Canola | plastid | 53.73 | 37.68 |
| CDX81170 | Canola | plastid | 53.9 | 37.66 |
| AT5G10370.1 | Thale cress | nucleus | 53.81 | 37.35 |
| AT4G01020.1 | Thale cress | nucleus | 53.98 | 37.21 |
| CDX96996 | Canola | nucleus | 52.35 | 36.46 |
| Bra009038.1-P | Field mustard | plastid | 52.11 | 36.33 |
| CDX69841 | Canola | plastid | 52.03 | 36.28 |
| GSMUA_Achr3P12710_001 | Banana | nucleus | 14.85 | 25.21 |
| GSMUA_Achr11P... | Banana | nucleus | 7.63 | 24.8 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 7.06 | 24.44 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 8.77 | 23.74 |
| GSMUA_Achr2P20940_001 | Banana | nucleus | 12.34 | 22.65 |
| GSMUA_Achr3P24350_001 | Banana | endoplasmic reticulum, vacuole | 12.34 | 21.38 |
| GSMUA_Achr4P23370_001 | Banana | nucleus | 12.42 | 20.4 |
| GSMUA_Achr5P05110_001 | Banana | nucleus | 14.85 | 18.01 |
| GSMUA_Achr10P... | Banana | nucleus | 12.82 | 16.21 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 14.04 | 16.09 |
| GSMUA_Achr4P07530_001 | Banana | mitochondrion | 15.18 | 16.05 |
| GSMUA_Achr3P20920_001 | Banana | mitochondrion, nucleus | 13.88 | 13.67 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 11.77 | 12.88 |
| GSMUA_Achr6P17860_001 | Banana | nucleus | 13.23 | 11.45 |
| GSMUA_Achr8P12540_001 | Banana | nucleus | 3.81 | 8.51 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | InterPro:DNA/RNA_helicase_DEAH_CS |
| InterPro:DUF1605 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr8G17640_001 |
| EnsemblPlants:GSMUA_Achr8P17640_001 | EnsemblPlants:GSMUA_Achr8T17640_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IBR_dom | InterPro:IPR001650 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR013087 | InterPro:IPR014001 | UniProt:M0TRB7 | InterPro:P-loop_NTPase |
| PFAM:PF00271 | PFAM:PF01485 | PFAM:PF07717 | PFAM:PF13445 | ScanProsite:PS00028 | ScanProsite:PS00518 |
| ScanProsite:PS00690 | PFscan:PS50089 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 |
| InterPro:RBD_domain_sf | SMART:SM00184 | SMART:SM00490 | SMART:SM00647 | SUPFAM:SSF52540 | SUPFAM:SSF54928 |
| SUPFAM:SSF57850 | UniParc:UPI00029644C5 | InterPro:Znf-RING_LisH | InterPro:Znf_C2H2_type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
Putative uncharacterized protein At4g01020, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G17640_001]
Coordinates
chr8:+:18047812..18055889
Molecular Weight (calculated)
138811.0 Da
IEP (calculated)
7.660
GRAVY (calculated)
-0.178
Length
1232 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVLIGETGSG KSTQLVQFLA DSGLGADGAV VCTQPRKIAV NSLAQRHFMK GTGLPHISCI IIDEAHERSL NTDLLLALIK RKLLENIDLR LIIMSATVDA
0101: SRLSGYFYSC STLYTEGDGG ILAFLTSQME VEWACENFTD PTAIVLPMHG KLSFVEQRHV FQNYPGKRKI IFCTNIAETS LTIRGVKYVV DSGMVKESRF
0201: EPSSGMNVLK VSRISQSSAN QRAGRAGRTE SGKCFRLYSE SDFQAMKMHQ EPEIRKVHLG IAVLRILALG IKNVQDFEFV DAPCPKATEV AIQNLIHLGA
0301: VTHKTDAYEL TETGWYLVKL GIEPRLGKII LEDKYRADCL RVPFCHHDGD LFTLLSVYKK WEGEPVNRNW CWRNSINAKS LRRCQEAKVI LSSLVENVAM
0401: FSGRNQLGYE VALTGQRIQL HPSSSLLVYG KRPDWVVFGE ILSSLTDYLV CVTAVDFDDL CMIQPPLFDL YQLESRKMLM DVISGVGNNL LKRFCGKSNQ
0501: NLQRLILHTQ NVCSDNRISI DIDFSKSEVH VYASEKDIEQ VASIVKDALE YEKKCLRNEC IEKRLFPGRP EGSYVNKWGR ITFLSPEIAE NAVTKLNEVE
0601: FCGSMIRALP IKAVEPKVTP FSAVRVKVSW PRRPCRGIAL VTCADGEAEY IVRDCFALTI GGRYINIQVS QKRQNCVFLT GVPRDISEEE LRDALLGLTK
0701: RRILGIHLAR GMAVADPPIA TCAEALIKEI SPFMTHKHFS DNNFRVEVFK PEPKDFTMKA MITFDGSLHL EAEKALNHIQ GKVLPGFETW QKIQCQQVFN
0801: SSLSFPSRVY CAIRKQLDSL LESFRCQRGV SYNLEQNDNG SYRVKISANS PKNIVDLRRP LEQLTQGKTI THSSLTPAVL QLLFSRDGVA CLKTVERETG
0901: TYVLYDRQNL NIRVFGPPKE VSAAEKNLVH SLLTLHENKL LEIPLQGRSL PPNLMKEVVQ RFGSDLQGLK ENVPGAEVTL STRRHTLYVR GDKELKQRVE
1001: DLISEVALSI NQNRVIERPP ESCCPICLCE LEDPYKLEAC GHTFCRACLE NQLESTIRSR DGFPLCCTKV GCQKLILLID LRSLLSFEKL EELFRASLSA
1101: FVASSDGTYR FCPTPDCPNL YRVAPLEEEV GPFICGACLA ETCRKCHLEY HPFVSCERYM EYKEDPDLSL AEWCRGKENV NNCPSCGLTI EKTEGCNHVE
1201: CRCGRHICWV CISSFRSSDE CYSHLRSVHQ SY
0101: SRLSGYFYSC STLYTEGDGG ILAFLTSQME VEWACENFTD PTAIVLPMHG KLSFVEQRHV FQNYPGKRKI IFCTNIAETS LTIRGVKYVV DSGMVKESRF
0201: EPSSGMNVLK VSRISQSSAN QRAGRAGRTE SGKCFRLYSE SDFQAMKMHQ EPEIRKVHLG IAVLRILALG IKNVQDFEFV DAPCPKATEV AIQNLIHLGA
0301: VTHKTDAYEL TETGWYLVKL GIEPRLGKII LEDKYRADCL RVPFCHHDGD LFTLLSVYKK WEGEPVNRNW CWRNSINAKS LRRCQEAKVI LSSLVENVAM
0401: FSGRNQLGYE VALTGQRIQL HPSSSLLVYG KRPDWVVFGE ILSSLTDYLV CVTAVDFDDL CMIQPPLFDL YQLESRKMLM DVISGVGNNL LKRFCGKSNQ
0501: NLQRLILHTQ NVCSDNRISI DIDFSKSEVH VYASEKDIEQ VASIVKDALE YEKKCLRNEC IEKRLFPGRP EGSYVNKWGR ITFLSPEIAE NAVTKLNEVE
0601: FCGSMIRALP IKAVEPKVTP FSAVRVKVSW PRRPCRGIAL VTCADGEAEY IVRDCFALTI GGRYINIQVS QKRQNCVFLT GVPRDISEEE LRDALLGLTK
0701: RRILGIHLAR GMAVADPPIA TCAEALIKEI SPFMTHKHFS DNNFRVEVFK PEPKDFTMKA MITFDGSLHL EAEKALNHIQ GKVLPGFETW QKIQCQQVFN
0801: SSLSFPSRVY CAIRKQLDSL LESFRCQRGV SYNLEQNDNG SYRVKISANS PKNIVDLRRP LEQLTQGKTI THSSLTPAVL QLLFSRDGVA CLKTVERETG
0901: TYVLYDRQNL NIRVFGPPKE VSAAEKNLVH SLLTLHENKL LEIPLQGRSL PPNLMKEVVQ RFGSDLQGLK ENVPGAEVTL STRRHTLYVR GDKELKQRVE
1001: DLISEVALSI NQNRVIERPP ESCCPICLCE LEDPYKLEAC GHTFCRACLE NQLESTIRSR DGFPLCCTKV GCQKLILLID LRSLLSFEKL EELFRASLSA
1101: FVASSDGTYR FCPTPDCPNL YRVAPLEEEV GPFICGACLA ETCRKCHLEY HPFVSCERYM EYKEDPDLSL AEWCRGKENV NNCPSCGLTI EKTEGCNHVE
1201: CRCGRHICWV CISSFRSSDE CYSHLRSVHQ SY
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Arabidopsis Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.