Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G087800.2 | Wheat | nucleus | 97.8 | 98.09 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 76.19 | 96.75 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 92.86 | 91.33 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 82.8 | 79.3 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 83.04 | 77.03 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 57.92 | 75.6 |
| OQU90279 | Sorghum | nucleus | 65.0 | 71.98 |
| Zm00001d022176_P002 | Maize | nucleus | 71.43 | 68.49 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 43.1 | 58.77 |
| KRG97543 | Soybean | nucleus, plastid | 50.54 | 49.1 |
| PGSC0003DMT400041805 | Potato | nucleus | 47.26 | 48.95 |
| KRH31333 | Soybean | nucleus, plastid | 50.18 | 48.56 |
| Solyc04g014210.2.1 | Tomato | nucleus | 48.87 | 47.46 |
| Solyc11g010310.1.1 | Tomato | nucleus | 48.04 | 47.33 |
| PGSC0003DMT400060759 | Potato | nucleus | 48.39 | 47.02 |
| AT5G10370.1 | Thale cress | nucleus | 47.14 | 44.62 |
| Bra006057.1-P | Field mustard | plastid | 46.61 | 44.62 |
| CDX81170 | Canola | plastid | 46.73 | 44.53 |
| CDX78376 | Canola | plastid | 46.43 | 44.39 |
| AT4G01020.1 | Thale cress | nucleus | 47.2 | 44.38 |
| CDX96996 | Canola | nucleus | 46.13 | 43.81 |
| Bra009038.1-P | Field mustard | plastid | 45.71 | 43.46 |
| CDX69841 | Canola | plastid | 45.6 | 43.35 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 44.29 | 42.83 |
| TraesCS3A01G131800.1 | Wheat | nucleus | 13.1 | 31.38 |
| TraesCS4A01G239500.2 | Wheat | nucleus | 13.1 | 31.21 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 13.21 | 30.88 |
| TraesCS7A01G156700.1 | Wheat | plastid | 12.38 | 29.17 |
| TraesCS1A01G243400.1 | Wheat | nucleus | 14.46 | 22.92 |
| TraesCS5A01G387700.2 | Wheat | golgi, nucleus | 14.94 | 21.73 |
| TraesCS1A01G151100.1 | Wheat | nucleus | 13.04 | 21.28 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 14.76 | 20.1 |
| TraesCS2A01G233700.1 | Wheat | nucleus | 15.0 | 19.95 |
| TraesCS3A01G021300.1 | Wheat | extracellular | 14.4 | 19.45 |
| TraesCS6A01G178200.1 | Wheat | nucleus | 12.68 | 17.33 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 11.85 | 16.94 |
| TraesCS6A01G299400.2 | Wheat | nucleus | 13.15 | 16.67 |
| TraesCS2A01G304100.1 | Wheat | nucleus, plastid | 13.51 | 15.89 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IBR_dom | InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:IPR013087 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01485 |
| PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00028 | ScanProsite:PS00518 | ScanProsite:PS00690 | PFscan:PS50089 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00647 | SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS5A01G074100 | EnsemblPlants:TraesCS5A01G074100.1 |
| InterPro:Znf_C2H2_type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | TIGR:cd00046 | TIGR:cd00079 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:87401123..87409083
Molecular Weight (calculated)
188304.0 Da
IEP (calculated)
7.498
GRAVY (calculated)
-0.216
Length
1680 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARSHADRPF RPPDRGPLPP HRSQQHSQPH PQTAAILLLR AGPDFSSPSA TEVDALVAGL RPDSLSVFSS GRHAARLLFR SLPAAAAAAR DLWSLRLEGR
0101: HLLTPYLPDA ALAAKAFPLI SSLFASHASR LLDSDLVSRL AARSSQLAAS VQTVKHRLRV RRSNLRDFDQ FNLQRKTLEA DKDLLDAKIA EYKAAMMSIR
0201: RAMLSGTDEE EEVDQEEEGV DLFGIVEDDD VDFARVHTMM LRECRRLNEG LPIYAYRRKI LNHIFANQVM ILIGETGSGK STQLVQYLAD SGLAANGSIV
0301: CTQPRKIAAI TLARRVDEES NGCYAENFVS SCSTFSCSRG FSSKIIFGTD SYLLHHCMND TGLDGVSYII VDEAHERSLN TDLLLALIKK KLLDRVDLRL
0401: IIMSATADAN RLAEYFYGCQ TFHVKGRNFP VEIKYIPDVS VDASFNIVPN SLNDACATAS YVNDVVRVVS VIHKNEEDGA ILAFLTSQLE VEWACENFSD
0501: ASAVVLPMHG KLSHVEQSRV FNSYPGKRKV IFCTNMAETS LTIKEVKYVV DPGLAKESRF VPSSGLNVLK VNWISQSSAN QRAGRAGRTG AGKCYRLYSE
0601: SHFRMMEVHQ EPEIRKVHLG TAVLRILALG VRDAQNFEFV DAPNPEAINM ALKNLEQLGA VKCKCNLFEL TDTGRYLVKL GIEPRLGKIM LDCFDSGLRK
0701: EGVILAAVMA NSSSIFCRVG TNEEKHKADL QKVRLCHQDG DLFTLLAVYK KWEDGNGNRN MWCWQNSINA KTMRKCQDTI SELENCLKHE LNIIIPSYWC
0801: WNPEVPSMHD KLLKRIILSS LVGNLAMFLG HEKFGYQVIS TDQAVNLHPS CSLLNYGSKP EWVVFTEILS IPNQYLVCVT AVDHDALYAL HSMSFIHQLE
0901: KHKLQIKVIS GLGHNLLRRF CGKYGQNQHR IISHLKEECR DDRTTVEINF KNNEVVLFAT RQDIEKVFCI VNGALECEAK MLRNECLERR LFPGRPGSSP
1001: LALFGSGAEI KHLELGKRYL TVEVLHQNAH DINDKELIFL VGSLIPGVAN FHKSAGNFRI ASDETKWGKF TFLKPEDAED AVLKLNGIEF HGSSLKVVPV
1101: CSSDNRGLPF PAVRARLSWP CNPSRGRAFG TRLLRLREAP IIGPSVSACE EALIREISSF MPNKSFPGQN FRVEVFPPEE NNSMMRATIT FDGSLHREAA
1201: RALDHLEGSF LPCCQPWQMI RCKHVFHSTL SCPLHVYNVI SQEVNSLLES FRSQKGVSYN FEKTDNGIFR LKLTANATKT IADLRRPLEI LMKGNTINHP
1301: DLTISAVQLL LSHDGVAHLK SIEQETGTYI LYDRQSLNIK VFGHQDQMAT AETKLVHALT ELLEKKPLEI SLRGHNLPPD LMKKTVENFG VDLEGLKKEM
1401: PAVNVELHKQ RHLLKVWGSK EDKRRVEGMI SELITSVKQN ALVQLPSGSV GGSKDKLRDD NELAQDACPI CLCETEDPFE LESCGHMFCR ACLVDQCESA
1501: MKSHDAFPVC CLKTGCRKPF LIVDLKHLVS NEKLEDLFRA SLRAFVTSRA GMYRFCPTPD CQSIYQVAAP DAETKPFVCG ACYVEICTKC HLEYHPLMSC
1601: EAYKQYKEDP DATLLEWRRG KENVKNCPSC GYTIEKSEGC NHVECRCGSH ICWACLANFR SSEECYGHLR SVHQSFVDIV
0101: HLLTPYLPDA ALAAKAFPLI SSLFASHASR LLDSDLVSRL AARSSQLAAS VQTVKHRLRV RRSNLRDFDQ FNLQRKTLEA DKDLLDAKIA EYKAAMMSIR
0201: RAMLSGTDEE EEVDQEEEGV DLFGIVEDDD VDFARVHTMM LRECRRLNEG LPIYAYRRKI LNHIFANQVM ILIGETGSGK STQLVQYLAD SGLAANGSIV
0301: CTQPRKIAAI TLARRVDEES NGCYAENFVS SCSTFSCSRG FSSKIIFGTD SYLLHHCMND TGLDGVSYII VDEAHERSLN TDLLLALIKK KLLDRVDLRL
0401: IIMSATADAN RLAEYFYGCQ TFHVKGRNFP VEIKYIPDVS VDASFNIVPN SLNDACATAS YVNDVVRVVS VIHKNEEDGA ILAFLTSQLE VEWACENFSD
0501: ASAVVLPMHG KLSHVEQSRV FNSYPGKRKV IFCTNMAETS LTIKEVKYVV DPGLAKESRF VPSSGLNVLK VNWISQSSAN QRAGRAGRTG AGKCYRLYSE
0601: SHFRMMEVHQ EPEIRKVHLG TAVLRILALG VRDAQNFEFV DAPNPEAINM ALKNLEQLGA VKCKCNLFEL TDTGRYLVKL GIEPRLGKIM LDCFDSGLRK
0701: EGVILAAVMA NSSSIFCRVG TNEEKHKADL QKVRLCHQDG DLFTLLAVYK KWEDGNGNRN MWCWQNSINA KTMRKCQDTI SELENCLKHE LNIIIPSYWC
0801: WNPEVPSMHD KLLKRIILSS LVGNLAMFLG HEKFGYQVIS TDQAVNLHPS CSLLNYGSKP EWVVFTEILS IPNQYLVCVT AVDHDALYAL HSMSFIHQLE
0901: KHKLQIKVIS GLGHNLLRRF CGKYGQNQHR IISHLKEECR DDRTTVEINF KNNEVVLFAT RQDIEKVFCI VNGALECEAK MLRNECLERR LFPGRPGSSP
1001: LALFGSGAEI KHLELGKRYL TVEVLHQNAH DINDKELIFL VGSLIPGVAN FHKSAGNFRI ASDETKWGKF TFLKPEDAED AVLKLNGIEF HGSSLKVVPV
1101: CSSDNRGLPF PAVRARLSWP CNPSRGRAFG TRLLRLREAP IIGPSVSACE EALIREISSF MPNKSFPGQN FRVEVFPPEE NNSMMRATIT FDGSLHREAA
1201: RALDHLEGSF LPCCQPWQMI RCKHVFHSTL SCPLHVYNVI SQEVNSLLES FRSQKGVSYN FEKTDNGIFR LKLTANATKT IADLRRPLEI LMKGNTINHP
1301: DLTISAVQLL LSHDGVAHLK SIEQETGTYI LYDRQSLNIK VFGHQDQMAT AETKLVHALT ELLEKKPLEI SLRGHNLPPD LMKKTVENFG VDLEGLKKEM
1401: PAVNVELHKQ RHLLKVWGSK EDKRRVEGMI SELITSVKQN ALVQLPSGSV GGSKDKLRDD NELAQDACPI CLCETEDPFE LESCGHMFCR ACLVDQCESA
1501: MKSHDAFPVC CLKTGCRKPF LIVDLKHLVS NEKLEDLFRA SLRAFVTSRA GMYRFCPTPD CQSIYQVAAP DAETKPFVCG ACYVEICTKC HLEYHPLMSC
1601: EAYKQYKEDP DATLLEWRRG KENVKNCPSC GYTIEKSEGC NHVECRCGSH ICWACLANFR SSEECYGHLR SVHQSFVDIV
001: MQVVIVREDK RNVRRKVSED EDDGTESEEE RLRDQREREE LEQHLRERDT ARTRKLTEPK MSKKEQEEFV RRDSAVDKGD IESLRKFSWQ EYMKKRKQKK
101: VLELKDDIED EPYLFGDEKL TEREIREFRY KREIYELIKK STQEEDNVGE YRMPDAYDQQ GSVDQEKRFA VSVQRYRDMG SAEKMNPFAE QEAWEDHQIE
201: NAALKFGAKN KEVSDNYEFV FEDQIDFIKA SVLAGDNYED EMHAKPSQDS AGKSAFHMLQ EDRKALPIYT YRDQLLNAVK DHQVLIIVGE TGSGKTTQIP
301: QYLHEAGYTK LGKVGCTQPR RVAAMSVAAR VAQEMGGKLG HEVGYSIRFE DCTSEKTILK YMTDGMLLRE LLGEPDLGSY SVIIVDEAHE RTLRTDILFG
401: LVKDIARARP DLKLLISSAT MDAEKFSDFF DQAPIFRFPG RRYPVDICFT TAPEADYMDA AITTVLTIHV KEPLGDVLVF LPGQEEIEAV EENLKHKIRG
501: LGTKIRELII CPIYANLPSE LQAKIFEPTP EGARKVVLAT NIAETSLTID GIKYVVDPGF SKMKSYNPRT GMESLLVTPI SKASATQRTG RAGRTSPGKC
601: YRLYTAFNYY NDLEDNTVPE IQRTNLASVV LSLKSLGIHN LLNFDFMDPP PSEALIKSLE LLFALGALNQ LGELTKAGRR MAEFPLDPML SKMIVVSDKY
701: KCSDEIISIA AMLSIGPSIF YRPKDKQVHA DNAMKNFHVG NVGDHIAFLK IYNSWKETNY STQWCYENYI QVRSMKRARD IRDQLEGLLE RVEIDVSSNA
801: NELDSIRKSI VAGFFPHTAK LQKNGSYRTV KHPQTVHIHP ASGLSQVLPR WVVYHQLVLT SKEYMRQVTE LKPEWLIEIA PHYYQLKDVE DATSKKMPKT
901: SGRAVV
101: VLELKDDIED EPYLFGDEKL TEREIREFRY KREIYELIKK STQEEDNVGE YRMPDAYDQQ GSVDQEKRFA VSVQRYRDMG SAEKMNPFAE QEAWEDHQIE
201: NAALKFGAKN KEVSDNYEFV FEDQIDFIKA SVLAGDNYED EMHAKPSQDS AGKSAFHMLQ EDRKALPIYT YRDQLLNAVK DHQVLIIVGE TGSGKTTQIP
301: QYLHEAGYTK LGKVGCTQPR RVAAMSVAAR VAQEMGGKLG HEVGYSIRFE DCTSEKTILK YMTDGMLLRE LLGEPDLGSY SVIIVDEAHE RTLRTDILFG
401: LVKDIARARP DLKLLISSAT MDAEKFSDFF DQAPIFRFPG RRYPVDICFT TAPEADYMDA AITTVLTIHV KEPLGDVLVF LPGQEEIEAV EENLKHKIRG
501: LGTKIRELII CPIYANLPSE LQAKIFEPTP EGARKVVLAT NIAETSLTID GIKYVVDPGF SKMKSYNPRT GMESLLVTPI SKASATQRTG RAGRTSPGKC
601: YRLYTAFNYY NDLEDNTVPE IQRTNLASVV LSLKSLGIHN LLNFDFMDPP PSEALIKSLE LLFALGALNQ LGELTKAGRR MAEFPLDPML SKMIVVSDKY
701: KCSDEIISIA AMLSIGPSIF YRPKDKQVHA DNAMKNFHVG NVGDHIAFLK IYNSWKETNY STQWCYENYI QVRSMKRARD IRDQLEGLLE RVEIDVSSNA
801: NELDSIRKSI VAGFFPHTAK LQKNGSYRTV KHPQTVHIHP ASGLSQVLPR WVVYHQLVLT SKEYMRQVTE LKPEWLIEIA PHYYQLKDVE DATSKKMPKT
901: SGRAVV
Arabidopsis Description
MEE29Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 [Source:UniProtKB/Swiss-Prot;Acc:F4IJV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.