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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G10370.1 Thale cress nucleus 94.07 94.7
Bra006057.1-P Field mustard plastid 78.9 80.34
CDX81170 Canola plastid 79.18 80.26
CDX78376 Canola plastid 78.68 80.02
CDX96996 Canola nucleus 76.72 77.5
CDX69841 Canola plastid 76.22 77.08
Bra009038.1-P Field mustard plastid 75.99 76.85
KRG97543 Soybean nucleus, plastid 55.34 57.2
KRH31333 Soybean nucleus, plastid 54.56 56.16
PGSC0003DMT400041805 Potato nucleus 49.69 54.75
GSMUA_Achr8P17640_001 Banana nucleus 37.21 53.98
Solyc11g010310.1.1 Tomato nucleus 50.42 52.84
Solyc04g014210.2.1 Tomato nucleus 51.15 52.83
PGSC0003DMT400060759 Potato nucleus 51.04 52.75
VIT_07s0191g00210.t01 Wine grape nucleus 49.41 50.83
OQU90279 Sorghum nucleus 42.31 49.84
Os07t0621500-01 Rice cytosol, nucleus 35.59 49.42
TraesCS5B01G080500.1 Wheat nucleus 36.43 49.21
TraesCS5A01G074100.1 Wheat nucleus 44.38 47.2
TraesCS5D01G087800.2 Wheat nucleus 44.04 46.99
TraesCS2D01G171200.2 Wheat nucleus 45.89 46.96
TraesCS2B01G190100.1 Wheat nucleus 45.5 46.89
TraesCS3D01G112900.1 Wheat nucleus 34.64 46.3
Zm00001d022176_P002 Maize nucleus 45.22 46.12
TraesCS3B01G129700.1 Wheat nucleus 41.58 45.7
TraesCS3A01G111000.1 Wheat nucleus 44.82 45.67
HORVU5Hr1G019730.1 Barley nucleus, plastid 43.42 45.43
TraesCS2A01G164100.1 Wheat nucleus 45.83 45.22
HORVU2Hr1G030040.17 Barley nucleus 45.33 44.38
AT4G18465.1 Thale cress nucleus 12.76 32.81
AT1G26370.1 Thale cress plastid 12.81 31.94
AT1G27900.1 Thale cress nucleus 12.48 31.86
AT3G62310.1 Thale cress nucleus 12.65 31.13
AT2G47250.1 Thale cress nucleus 12.65 31.0
AT4G16680.2 Thale cress nucleus 12.98 29.15
AT1G32490.1 Thale cress cytosol 14.21 24.33
AT5G14900.1 Thale cress cytosol 3.92 23.26
AT2G35340.1 Thale cress endoplasmic reticulum, nucleus 13.43 22.99
AT3G26560.1 Thale cress nucleus 14.61 22.35
AT2G01130.1 Thale cress nucleus 13.82 22.19
AT5G04895.1 Thale cress mitochondrion 14.33 22.05
AT2G35920.3 Thale cress plastid 12.26 21.32
AT1G48650.2 Thale cress nucleus, plastid 13.65 20.23
AT5G13010.1 Thale cress nucleus 13.65 19.44
AT1G33390.2 Thale cress nucleus 12.03 17.38
AT1G58050.1 Thale cress nucleus 13.43 16.94
AT1G58060.1 Thale cress nucleus 13.37 16.38
AT2G30800.1 Thale cress nucleus 11.86 16.32
AT1G06670.1 Thale cress nucleus 12.09 13.71
Protein Annotations
Gene3D:1.10.10.2130Gene3D:1.20.120.1750MapMan:19.2.2.1.5.4.3Gene3D:3.30.40.10Gene3D:3.40.50.300EntrezGene:826439
ProteinID:AEE81967.1ArrayExpress:AT4G01020EnsemblPlantsGene:AT4G01020RefSeq:AT4G01020TAIR:AT4G01020RefSeq:AT4G01020-TAIR-G
EnsemblPlants:AT4G01020.1TAIR:AT4G01020.1Unigene:At.42970ProteinID:CAB45785.1ProteinID:CAB80911.1ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_domInterPro:DNA/RNA_helicase_DEAH_CSInterPro:DUF1605GO:GO:0000166GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003824GO:GO:0004004GO:GO:0004386GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0005737
GO:GO:0006139GO:GO:0006396GO:GO:0008150GO:GO:0008152GO:GO:0009507GO:GO:0009536
GO:GO:0009987GO:GO:0016787GO:GO:0046872InterPro:Helicase-assoc_domInterPro:Helicase_ATP-bdInterPro:Helicase_C
InterPro:IBR_domInterPro:IPR001650InterPro:IPR001841InterPro:IPR013083InterPro:IPR013087InterPro:IPR014001
RefSeq:NP_567206.1InterPro:P-loop_NTPaseUniProt:P0CE10PFAM:PF00270PFAM:PF00271PFAM:PF01485
PFAM:PF04408PFAM:PF07717PFAM:PF13445PO:PO:0000293ScanProsite:PS00028ScanProsite:PS00518
ScanProsite:PS00690PFscan:PS50089PFscan:PS51192PFscan:PS51194PANTHER:PTHR18934PANTHER:PTHR18934:SF81
SMART:SM00487SMART:SM00490SMART:SM00647SMART:SM00847SUPFAM:SSF52540SUPFAM:SSF57850
UniParc:UPI0000162968InterPro:Znf-RING_LisHInterPro:Znf_C2H2_typeInterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDInterPro:Znf_RING_CS
SEG:seg:::::
Description
ATP-dependent RNA helicase DEAH11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P0CE10]
Coordinates
chr4:+:438991..445218
Molecular Weight (calculated)
202142.0 Da
IEP (calculated)
6.970
GRAVY (calculated)
-0.292
Length
1787 amino acids
Sequence
(BLAST)
0001: MRNSFPPSDG GRSTTDRRQQ SFPSSSTNRY NSRSAQSSPP LNHCTTWNQQ HSQYHNTNFP PNYRRDRAPS SGFSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: SKKQEIESIA LLCEIPEESV HVPQFGCIAA SFSFRQWVDA RSAVVALWDY RLQGRHDFVP ELIPNVVVPS DMDELKDRLR DLFSSHVLSL MENGQGVKKV
0201: RMEIDDKSRQ VASFSSKRGL KFEVFEKKKA LEAERDLVVN RLDEFNNAMK SILRYLIGQD GYEFDVDDED DEDVAVFSLE GAYDWRRIHY LILRECRRLE
0301: DGLPIYAYRR QILKKIHCEQ IMVLIGETGS GKSTQLVQFL ADSGVAASES IVCTQPRKIA AMTLTDRVRE ESSGCYEENT VSCTPTFSST EEISSKVVYM
0401: TDNCLLQHYM KDRSLSGISC VIIDEAHERS LNTDLLLALL RKLLSRRIDL RLVIMSATAD ANQLSQYLFD CGILHVNGRN FPVEIVYSPS GTEENSVVGR
0501: IASYAGDVVK MAVEIHKTEK EGTILAFLTS QAEVEWACER FVAPSAIALP LHGKLSFEEQ FMVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE
0601: SKYEPRTGMS ILKVCQVSQS SARQRAGRAG RTEPGRCYRL YSKTDFDSMN LNQEPEIRRV HLGVALLRML ALGIDNIAAF EFVDAPVPEA IAMAIQNLVQ
0701: LGAVVEKNGV LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADRLKVQFCN DNGDLFTLLS VYKEWASLPR
0801: DRRNKWCWEN SLNAKSMRRC EDTVKELEIC IERELTLVSP SYWVWNPNEG TKHDKYLKMV ILASLAENVA MYTGYDQLGY EVALTSQQVQ LHPSCSLLAF
0901: GQKPSWVVFG ELLSIVDQYL VCVTAFDFEA LYMLDPPPPF DASQMDERRL RVKKVVGCSS TVLKRFCGKS NRSLLSIVSR ARSLCSDERI GIQVDVDQNE
1001: IRLYASPLDM EKVSALVNDA LECEKKWMRN ECLEKYLFHG RGQIPIALFG SGAQIKHLEV DQRFLTVDVH YYGDDVVDDR ELLTFLEKKI DGCICSIYKF
1101: AANKQDCDEK EKWGRITFLT PESAMKATEI QKFDFKGSVL KVFPSLSTGG GIFKMPYFSS VTAKIRWPRK ESSGRGCLKC PSGDIHSILG DITSLEIGTN
1201: YVHIQRDQLS NDSILISGLG DLSEAEVLDV LEFRTQRRDL NFFIFRKKYS VQCPSPTACE EELHKRIFAR MSAKNPEPNC VQVQVFEPKE DNYFMRALIK
1301: FDGRLHLEAA KALQELNGEV LPGCLPWQKI KCEQLFQSSI ICSASIYNTV KRQLNVLLAR FERQKGGECC LEPTHNGAYR VKITAYATRP VAEMRRELEE
1401: LLRGKPINHP GFTPRVVQHL MSRDGINLMR KIQQETETYI LLDRHNLTVR ICGTSEKIAK AEQELVQSLM DYHESKQLEI HLRGPEIRPD LMKEVVKRFG
1501: PELQGIKEKV HGVDLKLNTR YHVIQVHGSK EMRQEVQKMV NELAREKSAL GEKPDEIELE CPICLSEVDD GYSLEGCSHL FCKACLLEQF EASMRNFDAF
1601: PILCSHIDCG APIVVADMRA LLSQEKLDEL ISASLSAFVT SSDGKLRFCS TPDCPSIYRV AGPQESGEPF ICGACHSETC TRCHLEYHPL ITCERYKKFK
1701: ENPDLSLKDW AKGKDVKECP ICKSTIEKTD GCNHLQCRCG KHICWTCLDV FTQAEPCYAH LRTIHGGIGL VELGVPEHPV AQPVHRL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.