Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G171200.2 | Wheat | nucleus | 98.04 | 97.37 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 97.69 | 93.54 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 95.79 | 91.01 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 64.48 | 84.5 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 78.6 | 83.83 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 58.36 | 78.63 |
| OQU90279 | Sorghum | nucleus | 65.57 | 74.95 |
| Zm00001d022176_P002 | Maize | nucleus | 72.32 | 71.58 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 43.77 | 61.61 |
| PGSC0003DMT400041805 | Potato | nucleus | 47.4 | 50.68 |
| KRG97543 | Soybean | nucleus, plastid | 50.17 | 50.32 |
| KRH31333 | Soybean | nucleus, plastid | 49.77 | 49.71 |
| Solyc04g014210.2.1 | Tomato | nucleus | 49.13 | 49.25 |
| Solyc11g010310.1.1 | Tomato | nucleus | 48.39 | 49.21 |
| PGSC0003DMT400060759 | Potato | nucleus | 48.79 | 48.93 |
| Bra006057.1-P | Field mustard | plastid | 46.42 | 45.87 |
| AT5G10370.1 | Thale cress | nucleus | 46.89 | 45.8 |
| CDX81170 | Canola | plastid | 46.37 | 45.6 |
| CDX78376 | Canola | plastid | 46.14 | 45.53 |
| AT4G01020.1 | Thale cress | nucleus | 46.89 | 45.5 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 44.98 | 44.91 |
| CDX69841 | Canola | plastid | 45.33 | 44.48 |
| Bra009038.1-P | Field mustard | plastid | 45.27 | 44.43 |
| CDX96996 | Canola | nucleus | 45.16 | 44.26 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 12.98 | 31.21 |
| TraesCS3B01G165500.1 | Wheat | nucleus | 12.46 | 30.81 |
| TraesCS4B01G075500.1 | Wheat | nucleus | 12.51 | 30.78 |
| TraesCS1B01G398400.1 | Wheat | cytosol | 6.81 | 29.87 |
| TraesCS7B01G060800.1 | Wheat | plastid | 11.94 | 29.03 |
| TraesCS1B01G398100.1 | Wheat | cytosol | 10.21 | 25.69 |
| TraesCS4B01G374800.1 | Wheat | nucleus | 14.01 | 23.23 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 14.24 | 22.96 |
| TraesCS1B01G254900.1 | Wheat | nucleus | 13.78 | 22.55 |
| TraesCS5B01G392800.1 | Wheat | nucleus | 14.65 | 22.09 |
| TraesCS1B01G168700.3 | Wheat | nucleus | 12.86 | 21.63 |
| TraesCS2B01G249700.1 | Wheat | nucleus | 14.53 | 19.95 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 14.13 | 19.85 |
| TraesCS3B01G024900.1 | Wheat | mitochondrion | 14.01 | 19.49 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 12.11 | 17.57 |
| TraesCS6B01G206600.1 | Wheat | nucleus | 12.69 | 17.11 |
| TraesCS6B01G329000.1 | Wheat | nucleus | 12.86 | 16.91 |
| TraesCS2B01G320800.1 | Wheat | nucleus, plastid | 13.32 | 16.18 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IBR_dom | InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:IPR013087 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01485 |
| PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00028 | ScanProsite:PS00518 | ScanProsite:PS00690 | PFscan:PS50089 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | InterPro:RBD_domain_sf | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00647 | SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF54928 | SUPFAM:SSF57850 |
| EnsemblPlantsGene:TraesCS2B01G190100 | EnsemblPlants:TraesCS2B01G190100.1 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2B:+:165503041..165512693
Molecular Weight (calculated)
194900.0 Da
IEP (calculated)
6.920
GRAVY (calculated)
-0.234
Length
1734 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRQSNHCRPF RPPDWGSPPP HCRPHHQQSH RQPQLAPRFA VILFRAGPNI SNPTATEIDA LVADLPSPPP DNLSVFSSGR DAARLLFRSL PAAAAAAREL
0101: WSLRLEGLHL LTPYLPNAAL AAHAFPLIAS LFASHASRLL DTDLVSRSTA RSAELAASIQ SLEHRLRSRN SFRDFDQLHL QKKTLEAEKD LVDAKIAEYK
0201: ASMSSIRRAM LHGTDEEEEV EEEGVYVFGI GEGEDVDFAR LHMTMLRECR RLNEGLPIYA YRRKILNHIF NNQVMILIGE TGSGKSTQLV QFLADSGLAA
0301: NGSIVCTQPR KIAAMSLARR VDEESNGCYK DNFVLSYSTF LNSQDLNSKI IFCTDSCLLH HCMNDTGLDG ISYIIVDEAH ERSLNTDLLL ALIKKKLLDR
0401: LDLHLIIMSA TADADKLADY FYGCQTFHVK GRNFPVEINY VPDVSVEASS NAVPNSMCDA CATASYVNDV VRMVSIIHKN EEEGAVLAFL TSQLEVEWAC
0501: ENFSDASAVV LPMHGKLSHV EQSRVFKSYP GKRKIIFCTN MAETSLTIKE VKYVVDSGLA KESRFVPSSG LNVLKVNWIS QSSANQRAGR AGRTGAGKCY
0601: RLYSEADFSM MDVHQEPEIR KVHLGTAVLR ILALGVKDAR KFEFVDAPNP EAISMAVKNL EQLGAVKHRL NCFELTDTGR YLVKLGIEPR LGKIMLDCFD
0701: VGLRKEGVVL AAVMANSSSI FCRVGTDEEK HKADLQKVRL CHRDGDLFTL LAVYKKWEDG HDNRNMWCWQ NSINAKTMRR CQETISELEN CLKHELNIIV
0801: PSYWRWNPEA PTVHDKDLKR IILSSLTGNL AMFLGHERFG YQVISTGQVV NLHPSSSLLN YGIKPEWVVF TEILSVPNQY LVCVTAVDHD ALYTIHPVSF
0901: IKQLEEQKLQ IKVISGLGTN LLRRFCGKYG QNQQKIISRL KEDCRDDRIT VEINFQNNEV VLFATEQNME KVRNECLERN LFPGRPGSSP IALFGSGAEI
1001: KHLELGGRYL TVEVLHQNAH DIDDKELIFL VDSIGSGVAN FHKSTGSFRI ASDGIKWGKF TFLKPEDAED AVSNLNGIEF NGSSLKLVPI CTFDNRGLPF
1101: PAVRAKLCWP RRHSSGRALV TCASGEAEFV VNDCFALGIG GRYIKCRVST KYENCVFAEG IPMHVTEPEL YDAFHSTTAR RILNIRLLRV KGNAIASPSV
1201: STCEEELVRE ISPFMPNKSF PGQNFRVEVF PPEENDSLTR ATITFDGSLH REAARALDHL EGHFLPCCQP WQIIQCNHVF HSTLSCPVRV YNVISQEVTS
1301: LLESFQSQKG VSYNFEKTEN GIFRLKLTAN ATKTIADLRR PLEILMKGKT INHPDLTLSA VQLLLSRDGV AHLKSIEQET GTYIMYDRQS LNIKVFGHQD
1401: QMAAAEVKLV HTLRQLLEKK PLEIYLRGHN LPPDLMKKTV ENFGVDLEGF NKEMPEIKVE LHQHRHLLKV WGSKEDKRRV ERMISELASF KHSSLVQLAS
1501: ENVGGKEDNQ RVDYNEPSED ACPICLCEIE DPFRLESCGH MFCLACLVDQ CESAMKSHDG FPICCLKTGC KEPLLVVDLK HLLSNEKLED LFRASLRAFV
1601: ASRAGMYRFC PTPDCQSIYQ VAAPDAETKP FSCGACYVEI CTKCHFEYHP FISCEAYKEY KEDPDLTLLE WRKGKANVKS CPSCGYTIEK SDGCNHVECR
1701: CGSHICWVCL ENFRSSEECY GHLRSVHQSF VDIV
0101: WSLRLEGLHL LTPYLPNAAL AAHAFPLIAS LFASHASRLL DTDLVSRSTA RSAELAASIQ SLEHRLRSRN SFRDFDQLHL QKKTLEAEKD LVDAKIAEYK
0201: ASMSSIRRAM LHGTDEEEEV EEEGVYVFGI GEGEDVDFAR LHMTMLRECR RLNEGLPIYA YRRKILNHIF NNQVMILIGE TGSGKSTQLV QFLADSGLAA
0301: NGSIVCTQPR KIAAMSLARR VDEESNGCYK DNFVLSYSTF LNSQDLNSKI IFCTDSCLLH HCMNDTGLDG ISYIIVDEAH ERSLNTDLLL ALIKKKLLDR
0401: LDLHLIIMSA TADADKLADY FYGCQTFHVK GRNFPVEINY VPDVSVEASS NAVPNSMCDA CATASYVNDV VRMVSIIHKN EEEGAVLAFL TSQLEVEWAC
0501: ENFSDASAVV LPMHGKLSHV EQSRVFKSYP GKRKIIFCTN MAETSLTIKE VKYVVDSGLA KESRFVPSSG LNVLKVNWIS QSSANQRAGR AGRTGAGKCY
0601: RLYSEADFSM MDVHQEPEIR KVHLGTAVLR ILALGVKDAR KFEFVDAPNP EAISMAVKNL EQLGAVKHRL NCFELTDTGR YLVKLGIEPR LGKIMLDCFD
0701: VGLRKEGVVL AAVMANSSSI FCRVGTDEEK HKADLQKVRL CHRDGDLFTL LAVYKKWEDG HDNRNMWCWQ NSINAKTMRR CQETISELEN CLKHELNIIV
0801: PSYWRWNPEA PTVHDKDLKR IILSSLTGNL AMFLGHERFG YQVISTGQVV NLHPSSSLLN YGIKPEWVVF TEILSVPNQY LVCVTAVDHD ALYTIHPVSF
0901: IKQLEEQKLQ IKVISGLGTN LLRRFCGKYG QNQQKIISRL KEDCRDDRIT VEINFQNNEV VLFATEQNME KVRNECLERN LFPGRPGSSP IALFGSGAEI
1001: KHLELGGRYL TVEVLHQNAH DIDDKELIFL VDSIGSGVAN FHKSTGSFRI ASDGIKWGKF TFLKPEDAED AVSNLNGIEF NGSSLKLVPI CTFDNRGLPF
1101: PAVRAKLCWP RRHSSGRALV TCASGEAEFV VNDCFALGIG GRYIKCRVST KYENCVFAEG IPMHVTEPEL YDAFHSTTAR RILNIRLLRV KGNAIASPSV
1201: STCEEELVRE ISPFMPNKSF PGQNFRVEVF PPEENDSLTR ATITFDGSLH REAARALDHL EGHFLPCCQP WQIIQCNHVF HSTLSCPVRV YNVISQEVTS
1301: LLESFQSQKG VSYNFEKTEN GIFRLKLTAN ATKTIADLRR PLEILMKGKT INHPDLTLSA VQLLLSRDGV AHLKSIEQET GTYIMYDRQS LNIKVFGHQD
1401: QMAAAEVKLV HTLRQLLEKK PLEIYLRGHN LPPDLMKKTV ENFGVDLEGF NKEMPEIKVE LHQHRHLLKV WGSKEDKRRV ERMISELASF KHSSLVQLAS
1501: ENVGGKEDNQ RVDYNEPSED ACPICLCEIE DPFRLESCGH MFCLACLVDQ CESAMKSHDG FPICCLKTGC KEPLLVVDLK HLLSNEKLED LFRASLRAFV
1601: ASRAGMYRFC PTPDCQSIYQ VAAPDAETKP FSCGACYVEI CTKCHFEYHP FISCEAYKEY KEDPDLTLLE WRKGKANVKS CPSCGYTIEK SDGCNHVECR
1701: CGSHICWVCL ENFRSSEECY GHLRSVHQSF VDIV
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Arabidopsis Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.