Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G180200.1 | Wheat | cytosol | 50.63 | 27.74 |
| TraesCS1B01G398100.1 | Wheat | cytosol | 37.22 | 21.34 |
| TraesCS3B01G165500.1 | Wheat | nucleus | 37.22 | 20.97 |
| TraesCS7B01G060800.1 | Wheat | plastid | 36.96 | 20.48 |
| TraesCS4B01G075500.1 | Wheat | nucleus | 32.15 | 18.01 |
| TraesCS4B01G374800.1 | Wheat | nucleus | 40.25 | 15.2 |
| TraesCS1B01G254900.1 | Wheat | nucleus | 40.0 | 14.91 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 37.72 | 13.85 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 41.01 | 13.13 |
| TraesCS1B01G168700.3 | Wheat | nucleus | 31.9 | 12.22 |
| TraesCS2B01G249700.1 | Wheat | nucleus | 36.46 | 11.4 |
| TraesCS5B01G392800.1 | Wheat | nucleus | 31.39 | 10.78 |
| TraesCS6B01G206600.1 | Wheat | nucleus | 34.43 | 10.58 |
| TraesCS6B01G329000.1 | Wheat | nucleus | 33.67 | 10.08 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 28.61 | 9.46 |
| TraesCS3B01G024900.1 | Wheat | mitochondrion | 29.11 | 9.22 |
| TraesCS2B01G320800.1 | Wheat | nucleus, plastid | 29.37 | 8.12 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 29.62 | 7.2 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 29.87 | 6.81 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 20.76 | 6.2 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G398400.1 | EnsemblPlantsGene:TraesCS1B01G398400 | Gene3D:3.40.50.300 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF193 | PFscan:PS51192 | PFscan:PS51194 |
| SMART:SM00487 | SUPFAM:SSF52540 | TIGR:cd00046 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1B:+:629480615..629487192
Molecular Weight (calculated)
44434.9 Da
IEP (calculated)
7.781
GRAVY (calculated)
-0.050
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKGRKRKAD SINNPWNNRP YSKRYYELFD RRHTLPVWQQ KDEFIRTLLD NQIIILAGDA GSGSTTQIPH FLFEALGFGN NTVIAYALPS RIGAMSIAQR
101: VAEEMDVSIG HEVGYKTRFE ASTSNITALK FLTDDVLFRE ALMDPLLTKY SVIVLGEVHK FRLSTDVLCT VLKKALEERP KMKLVLMSAI DEEATFQCYF
201: PSAIIMKLPG PIYPVTIHYA PKEVGSYVKA AIDISLQIHS NEPAGAILIF LCAQAEVEYA CWKIRQKLNA SRDLVGAVDI VPIYSTISLE MQQRLFQPPP
301: IIWNVEAPPG RTIFVSTGIA EASLTLDGIV YVIDSGFSYQ KICDGDMWAE KHILAPIPKA CASQRAGLAG RKQPGRCYRL YTEEWFQELS QQVYP
101: VAEEMDVSIG HEVGYKTRFE ASTSNITALK FLTDDVLFRE ALMDPLLTKY SVIVLGEVHK FRLSTDVLCT VLKKALEERP KMKLVLMSAI DEEATFQCYF
201: PSAIIMKLPG PIYPVTIHYA PKEVGSYVKA AIDISLQIHS NEPAGAILIF LCAQAEVEYA CWKIRQKLNA SRDLVGAVDI VPIYSTISLE MQQRLFQPPP
301: IIWNVEAPPG RTIFVSTGIA EASLTLDGIV YVIDSGFSYQ KICDGDMWAE KHILAPIPKA CASQRAGLAG RKQPGRCYRL YTEEWFQELS QQVYP
001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.