Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G178200.1 | Wheat | nucleus | 90.82 | 95.04 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 93.39 | 93.32 |
| TraesCS6B01G329000.1 | Wheat | nucleus | 82.19 | 80.14 |
| KXG30805 | Sorghum | nucleus | 75.74 | 76.33 |
| Os02t0736600-01 | Rice | nucleus | 74.42 | 75.24 |
| Zm00001d017967_P003 | Maize | nucleus | 72.94 | 73.34 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 49.61 | 59.35 |
| VIT_07s0005g00860.t01 | Wine grape | nucleus | 52.1 | 50.72 |
| Solyc01g095710.2.1 | Tomato | nucleus | 50.0 | 47.95 |
| AT1G33390.2 | Thale cress | nucleus | 45.96 | 47.78 |
| PGSC0003DMT400000297 | Potato | nucleus | 49.3 | 47.46 |
| KRH65271 | Soybean | nucleus | 48.52 | 47.2 |
| KRH76262 | Soybean | nucleus | 48.37 | 47.09 |
| CDY48353 | Canola | nucleus | 44.25 | 46.52 |
| CDY34159 | Canola | nucleus | 44.56 | 46.32 |
| Bra032998.1-P | Field mustard | nucleus | 44.25 | 46.0 |
| TraesCS1B01G398400.1 | Wheat | cytosol | 10.58 | 34.43 |
| TraesCS4B01G075500.1 | Wheat | nucleus | 18.04 | 32.91 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 18.43 | 32.87 |
| TraesCS3B01G165500.1 | Wheat | nucleus | 17.73 | 32.52 |
| TraesCS7B01G060800.1 | Wheat | plastid | 17.19 | 31.0 |
| TraesCS1B01G398100.1 | Wheat | cytosol | 13.45 | 25.11 |
| TraesCS4B01G374800.1 | Wheat | nucleus | 20.3 | 24.95 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 20.76 | 24.81 |
| TraesCS1B01G254900.1 | Wheat | nucleus | 19.75 | 23.96 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 21.07 | 21.96 |
| TraesCS2B01G249700.1 | Wheat | nucleus | 20.68 | 21.06 |
| TraesCS1B01G168700.3 | Wheat | nucleus | 16.87 | 21.05 |
| TraesCS5B01G392800.1 | Wheat | nucleus | 17.42 | 19.48 |
| TraesCS3B01G024900.1 | Wheat | mitochondrion | 17.96 | 18.52 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 15.4 | 16.57 |
| TraesCS2B01G320800.1 | Wheat | nucleus, plastid | 16.56 | 14.92 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 17.19 | 13.59 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 13.14 | 12.77 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 17.11 | 12.69 |
| Os02t0736800-01 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 |
| ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF99 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6B01G206600 | EnsemblPlants:TraesCS6B01G206600.1 | TIGR:cd00046 |
| TIGR:cd00079 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:260105649..260110969
Molecular Weight (calculated)
145170.0 Da
IEP (calculated)
8.237
GRAVY (calculated)
-0.554
Length
1286 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEDDSNALIL PCKRKNKVQG IGKDGKKSKS KEDPKMSKTQ LKKMQKLEEE KQKKALQAKS IEFLQKHMIA DDVFSLLDTT CSIGKAATMK EKFRRAAKFS
0101: KHGLDVPEEL SLFKKNCGRK GVPGDNEAVP EVSPVKFIKA AKLDHPGSER KNHEKDSMKP MMDLGVSILE QKTEGTNDNA GISVRQIILG QKTEETNDDA
0201: DILAHQPIQS SVQNCSAAEI DLQDKELQQS ETALQECFNP PIVVPVSRPQ EVEKARRDLP IIMMEQEIME AIYENSVVIL CGETGCGKTT QVPQFLYEAG
0301: FGTSNRAGRK GMIGITQPRR VAVLATSKRV SYELGLKLGK EVGFQVRHDK EVGSKCSIKF MTDGILLREI QSDILLKHYS VIILDEAHER SLNTDILIGM
0401: LCRITKLRKD TYADQQKKIR SGKNIKPEDM ISQLKVVLMS ATLQLKEFIS NRRLFDVIPP TVEVPARQFP VTIHFTKRTH DDYLAQAYKK VLSIHKSLPP
0501: GGILVFVTGQ REVDYLCKKL QRASKRQIGK KPERVGDECG SRPEIDEKEI FEAYDIDRTE AEHQEDMFSS YGQDEMDDGL NVDSSDAETE SETDTDSDED
0601: SAAHETTEDG PVLSFLKHAE SLSVLKASFK GISGISGESE AAEESSNVTI AEKSNPFNPS FSKRTEPTSV SHRRLRVLPL YAMQPASQQL RVFRDIPEGE
0701: RLVVVATNVA ETSLTIPGIT YVVDTGKEKV KNYDHAMGMA SYEVQWISKA SASQRAGRAG RTGPGHCYRL YSGAAYGKDG LFPEFSEPEI KKMPVDSLVL
0801: MLKFMKIDKV ENFPFPTPPN DESLVEAKRC LKTLEALDSK EKLTSMGKAM AQYPMSPRHS RLLLTIIKIL KSQQGYARSN FILGYATAAA SALSYANPFL
0901: IQVDTSRESN QDGPDPERKD QDERKRQKKL KAMVREARKD FSIPSSDALT ISHALRSFEC SRNPVEFCRE YSLHLKTMEE MSKLRKQLLR LIFHNSKFCD
1001: EFAWNYGGSE DVEQAWRSET DKKPMLNEEE LLGQGICAGW ADRVAKKINT FSGLSKEDRK VRAGRYQSCI LDDTIYLHRS SSVAQTPPEF VVYSELLNTK
1101: RSYMHGVTSV KPGWLFKYAS SLCTFSAPLE DPKPYYEPQN DQVYCYVSPI FSRHNWQLPL HSLPIEDPTR RLQVFAWALL KGDVLPCLRM VQKFLALSPS
1201: AVLGPASQRR VGDLLNRMKI GGKLKDSRRA LRDAWSSDPD FLYPEIQAWI QDKYQSQFEA IWEQMHQEVR LEGHQLFPKR FKKVEG
0101: KHGLDVPEEL SLFKKNCGRK GVPGDNEAVP EVSPVKFIKA AKLDHPGSER KNHEKDSMKP MMDLGVSILE QKTEGTNDNA GISVRQIILG QKTEETNDDA
0201: DILAHQPIQS SVQNCSAAEI DLQDKELQQS ETALQECFNP PIVVPVSRPQ EVEKARRDLP IIMMEQEIME AIYENSVVIL CGETGCGKTT QVPQFLYEAG
0301: FGTSNRAGRK GMIGITQPRR VAVLATSKRV SYELGLKLGK EVGFQVRHDK EVGSKCSIKF MTDGILLREI QSDILLKHYS VIILDEAHER SLNTDILIGM
0401: LCRITKLRKD TYADQQKKIR SGKNIKPEDM ISQLKVVLMS ATLQLKEFIS NRRLFDVIPP TVEVPARQFP VTIHFTKRTH DDYLAQAYKK VLSIHKSLPP
0501: GGILVFVTGQ REVDYLCKKL QRASKRQIGK KPERVGDECG SRPEIDEKEI FEAYDIDRTE AEHQEDMFSS YGQDEMDDGL NVDSSDAETE SETDTDSDED
0601: SAAHETTEDG PVLSFLKHAE SLSVLKASFK GISGISGESE AAEESSNVTI AEKSNPFNPS FSKRTEPTSV SHRRLRVLPL YAMQPASQQL RVFRDIPEGE
0701: RLVVVATNVA ETSLTIPGIT YVVDTGKEKV KNYDHAMGMA SYEVQWISKA SASQRAGRAG RTGPGHCYRL YSGAAYGKDG LFPEFSEPEI KKMPVDSLVL
0801: MLKFMKIDKV ENFPFPTPPN DESLVEAKRC LKTLEALDSK EKLTSMGKAM AQYPMSPRHS RLLLTIIKIL KSQQGYARSN FILGYATAAA SALSYANPFL
0901: IQVDTSRESN QDGPDPERKD QDERKRQKKL KAMVREARKD FSIPSSDALT ISHALRSFEC SRNPVEFCRE YSLHLKTMEE MSKLRKQLLR LIFHNSKFCD
1001: EFAWNYGGSE DVEQAWRSET DKKPMLNEEE LLGQGICAGW ADRVAKKINT FSGLSKEDRK VRAGRYQSCI LDDTIYLHRS SSVAQTPPEF VVYSELLNTK
1101: RSYMHGVTSV KPGWLFKYAS SLCTFSAPLE DPKPYYEPQN DQVYCYVSPI FSRHNWQLPL HSLPIEDPTR RLQVFAWALL KGDVLPCLRM VQKFLALSPS
1201: AVLGPASQRR VGDLLNRMKI GGKLKDSRRA LRDAWSSDPD FLYPEIQAWI QDKYQSQFEA IWEQMHQEVR LEGHQLFPKR FKKVEG
0001: MASVVGDDCN LDVMPPRKKK NKGSNKMQDK LNSNNNTGSK KSRKRKLNSN VNTVACKSQK RKLKKLEEDK EKEILFSKTA ELLDKYKISE DVSSLLQSSK
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
Arabidopsis Description
FAS4FAS4 [Source:UniProtKB/TrEMBL;Acc:A0A178WIP4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.