Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G298900.1 | Wheat | nucleus | 95.56 | 97.19 |
| TraesCS3D01G302800.2 | Wheat | plastid | 99.25 | 93.09 |
| HORVU3Hr1G074660.7 | Barley | plastid | 91.72 | 86.03 |
| Os01t0767700-01 | Rice | nucleus | 81.34 | 79.48 |
| EES01523 | Sorghum | nucleus | 78.91 | 78.91 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 78.66 | 72.31 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 61.67 | 65.45 |
| VIT_12s0028g01050.t01 | Wine grape | nucleus | 62.93 | 61.09 |
| Solyc07g044930.2.1 | Tomato | nucleus | 59.75 | 59.55 |
| KRH73592 | Soybean | nucleus | 56.74 | 58.35 |
| KRH14525 | Soybean | nucleus | 56.49 | 57.99 |
| CDY10756 | Canola | nucleus | 50.29 | 55.19 |
| Bra021665.1-P | Field mustard | nucleus | 55.56 | 50.88 |
| AT2G30800.1 | Thale cress | nucleus | 55.23 | 50.81 |
| CDX97797 | Canola | nucleus | 54.56 | 50.5 |
| CDY29644 | Canola | nucleus | 55.06 | 50.34 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 53.81 | 48.71 |
| CDY10215 | Canola | nucleus | 50.38 | 46.88 |
| AT1G06670.1 | Thale cress | nucleus | 51.46 | 39.02 |
| TraesCS1B01G168700.3 | Wheat | nucleus | 27.87 | 32.3 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 17.66 | 29.26 |
| TraesCS1B01G398400.1 | Wheat | cytosol | 9.46 | 28.61 |
| TraesCS7B01G060800.1 | Wheat | plastid | 16.4 | 27.49 |
| TraesCS4B01G075500.1 | Wheat | nucleus | 15.82 | 26.81 |
| TraesCS3B01G024900.1 | Wheat | mitochondrion | 27.78 | 26.62 |
| TraesCS5B01G392800.1 | Wheat | nucleus | 25.44 | 26.43 |
| TraesCS3B01G165500.1 | Wheat | nucleus | 15.31 | 26.11 |
| TraesCS1B01G398100.1 | Wheat | cytosol | 13.72 | 23.8 |
| TraesCS2B01G320800.1 | Wheat | nucleus, plastid | 25.61 | 21.43 |
| TraesCS4B01G374800.1 | Wheat | nucleus | 17.82 | 20.36 |
| TraesCS1B01G254900.1 | Wheat | nucleus | 17.57 | 19.81 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 17.74 | 19.7 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 18.33 | 17.75 |
| TraesCS2B01G249700.1 | Wheat | nucleus | 18.24 | 17.26 |
| TraesCS6B01G206600.1 | Wheat | nucleus | 16.57 | 15.4 |
| TraesCS6B01G329000.1 | Wheat | nucleus | 16.82 | 15.24 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 17.41 | 12.79 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 13.47 | 12.17 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 17.57 | 12.11 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:1.25.40.20 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:Ankyrin_rpt |
| InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001374 | InterPro:IPR001650 |
| InterPro:IPR002110 | InterPro:IPR014001 | InterPro:IPR020683 | InterPro:IPR036770 | InterPro:IPR036867 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01424 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS50088 |
| PFscan:PS50297 | PFscan:PS51061 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF100 |
| InterPro:R3H_DEXH_helicase | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF48403 | SUPFAM:SSF52540 | SUPFAM:SSF82708 | EnsemblPlantsGene:TraesCS3B01G337600 | EnsemblPlants:TraesCS3B01G337600.3 |
| TIGR:cd00046 | TIGR:cd00079 | TIGR:cd00204 | TIGR:cd06007 | SEG:seg | : |
Description
No Description!
Coordinates
chr3B:+:543874109..543884645
Molecular Weight (calculated)
130943.0 Da
IEP (calculated)
7.740
GRAVY (calculated)
-0.264
Length
1195 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGRKGPKGAK NAAALTKAAL AAMSEETTVR ITTLLEDFRA SDAQVHTFEP SLTNQERAAV HAMCKKMGMI SKSKGYGERR CLSVYKTKNT QGAVKEEGPS
0101: KLGFSEEARQ VLLDLFTHYP PDDAELNGDA VKNPGDKAAK ILWKTDTAFS RPAMQKHDIA KKVKMLTSKL NDTRQLRKIG EGRSKLPIAS FKDHISSTLE
0201: NHQVVLISGE TGCGKTTQVP QYILDHVWGK GESCKIICTQ PRRISAMSVA ERISVERGET VGDTVGYKIR LESKGGKNSS IMFCTNGVLL RVLIGRVTNI
0301: SKRQRAADDV IMGITHIIVD EIHERDRFSD FMLAILRDLL PIYPHLHLVL MSATIDAERF SQYFNGCPVI QVPGHTYPVK TFYLEDVLSI LQSVGDNHLN
0401: PETNDLGLDS VLTDDYKSSM DEAISIALVS DEFDPLIELI SIEQNPEIFN YQHSETGVTP LMVFARKGQL GDVCMLLSFG VDCSARDHDG KSALDWAQQE
0501: NQVEAYEVIK KHMDCSPAKL PEENELLKKY LATINPEHID TVLIERLLRK ICTDSNEGAI LVFLPGWEDI NQTRERLLAS SFRDSSKFLV LSLHSMIPSS
0601: EQKKVFKRAP AGVRKIILST NIAETAVTID DVVFVIDSGR MKEKSYDPYN NVSTLHTSWV SRANARQREG RAGRCQPGTC YHLYSRFRAA SLPEFQIPEI
0701: KRMPIEELCL QVKLLDPNSK IADFLKKTLD PPVTETVKNA ITVLQDLGAL TQNEQLTDLG EKLGSLPVHP STSKMLLFGI LMNCLDPALT LACAADYRDP
0801: FVLPMAPDER KRAAAAKVEL ASLYGGYSDQ LAVVAAFDCW TCAKVKGQEA LFCSKYFVAS NTMNMLSSMR KQLHSELTQR GFLPADTSAC SLNAKVPGII
0901: SAVLVAGAYP MVGRLLPPRK NARRAVLETA SGAKVRLHPH SSNFNLSFNK SSGNPLMVFD EITRGDGGMY VKNCSVVGSY PLLLLATEIA VAPPDDVSDE
1001: DDEGSSGDEA GKSTLGQQKE EIMSSPDNTV SVVVDRWLRF DATALDVAQI YCLRERLASA ILFKVKHPQD VLPPALGATM YAIACILSYD GLPGNLATRH
1101: GSGQSSTDAS GSAEGRKVGF IPPGGFLMSL LSDVPPNAPH HQKSSNHPGG GSGHIRSSRA PAGRFNQSQQ HPGRNSSGPG SSASQSFKRQ RDAAR
0101: KLGFSEEARQ VLLDLFTHYP PDDAELNGDA VKNPGDKAAK ILWKTDTAFS RPAMQKHDIA KKVKMLTSKL NDTRQLRKIG EGRSKLPIAS FKDHISSTLE
0201: NHQVVLISGE TGCGKTTQVP QYILDHVWGK GESCKIICTQ PRRISAMSVA ERISVERGET VGDTVGYKIR LESKGGKNSS IMFCTNGVLL RVLIGRVTNI
0301: SKRQRAADDV IMGITHIIVD EIHERDRFSD FMLAILRDLL PIYPHLHLVL MSATIDAERF SQYFNGCPVI QVPGHTYPVK TFYLEDVLSI LQSVGDNHLN
0401: PETNDLGLDS VLTDDYKSSM DEAISIALVS DEFDPLIELI SIEQNPEIFN YQHSETGVTP LMVFARKGQL GDVCMLLSFG VDCSARDHDG KSALDWAQQE
0501: NQVEAYEVIK KHMDCSPAKL PEENELLKKY LATINPEHID TVLIERLLRK ICTDSNEGAI LVFLPGWEDI NQTRERLLAS SFRDSSKFLV LSLHSMIPSS
0601: EQKKVFKRAP AGVRKIILST NIAETAVTID DVVFVIDSGR MKEKSYDPYN NVSTLHTSWV SRANARQREG RAGRCQPGTC YHLYSRFRAA SLPEFQIPEI
0701: KRMPIEELCL QVKLLDPNSK IADFLKKTLD PPVTETVKNA ITVLQDLGAL TQNEQLTDLG EKLGSLPVHP STSKMLLFGI LMNCLDPALT LACAADYRDP
0801: FVLPMAPDER KRAAAAKVEL ASLYGGYSDQ LAVVAAFDCW TCAKVKGQEA LFCSKYFVAS NTMNMLSSMR KQLHSELTQR GFLPADTSAC SLNAKVPGII
0901: SAVLVAGAYP MVGRLLPPRK NARRAVLETA SGAKVRLHPH SSNFNLSFNK SSGNPLMVFD EITRGDGGMY VKNCSVVGSY PLLLLATEIA VAPPDDVSDE
1001: DDEGSSGDEA GKSTLGQQKE EIMSSPDNTV SVVVDRWLRF DATALDVAQI YCLRERLASA ILFKVKHPQD VLPPALGATM YAIACILSYD GLPGNLATRH
1101: GSGQSSTDAS GSAEGRKVGF IPPGGFLMSL LSDVPPNAPH HQKSSNHPGG GSGHIRSSRA PAGRFNQSQQ HPGRNSSGPG SSASQSFKRQ RDAAR
0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
Arabidopsis Description
HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.