Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021665.1-P | Field mustard | nucleus | 96.05 | 95.02 |
| CDY29644 | Canola | nucleus | 95.97 | 94.8 |
| CDY10756 | Canola | nucleus | 74.13 | 87.88 |
| AT2G30800.1 | Thale cress | nucleus | 87.53 | 86.99 |
| CDY10215 | Canola | nucleus | 63.44 | 63.78 |
| VIT_12s0028g01050.t01 | Wine grape | nucleus | 55.38 | 58.08 |
| KRH73592 | Soybean | nucleus | 52.13 | 57.92 |
| KRH14525 | Soybean | nucleus | 51.51 | 57.13 |
| Solyc07g044930.2.1 | Tomato | nucleus | 52.9 | 56.96 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 49.81 | 54.72 |
| EES01523 | Sorghum | nucleus | 50.58 | 54.64 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 50.5 | 54.56 |
| Os01t0767700-01 | Rice | nucleus | 50.89 | 53.72 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 45.39 | 52.04 |
| TraesCS3D01G302800.2 | Wheat | plastid | 50.74 | 51.41 |
| HORVU3Hr1G074660.7 | Barley | plastid | 49.57 | 50.24 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 50.12 | 49.77 |
| CDX84588 | Canola | plastid, vacuole | 24.71 | 30.82 |
| CDX79642 | Canola | nucleus, vacuole | 24.71 | 30.82 |
| CDY68405 | Canola | nucleus | 15.72 | 30.3 |
| CDX95715 | Canola | cytosol | 16.42 | 29.24 |
| CDX83337 | Canola | cytosol | 16.34 | 29.18 |
| CDX74059 | Canola | nucleus | 5.96 | 29.17 |
| CDY17694 | Canola | nucleus | 25.48 | 28.99 |
| CDX76626 | Canola | nucleus | 16.11 | 28.97 |
| CDY11413 | Canola | nucleus | 16.03 | 28.83 |
| CDY57512 | Canola | nucleus | 25.33 | 28.81 |
| CDY34567 | Canola | nucleus | 14.72 | 28.66 |
| CDY36075 | Canola | nucleus | 14.72 | 28.19 |
| CDX78859 | Canola | nucleus | 15.18 | 28.08 |
| CDY11762 | Canola | nucleus | 15.26 | 27.98 |
| CDX90112 | Canola | nucleus | 15.26 | 27.94 |
| CDX93688 | Canola | plastid | 25.48 | 27.88 |
| CDY40601 | Canola | nucleus, plastid | 25.48 | 27.86 |
| CDX99466 | Canola | nucleus | 15.1 | 27.86 |
| CDY23338 | Canola | cytosol | 8.91 | 27.25 |
| CDX74061 | Canola | cytosol | 6.74 | 27.1 |
| CDX85017 | Canola | cytosol, plastid | 15.03 | 26.87 |
| CDX98799 | Canola | mitochondrion | 24.01 | 26.86 |
| CDX70187 | Canola | mitochondrion | 24.01 | 26.82 |
| CDY16154 | Canola | nucleus, plastid | 14.79 | 26.42 |
| CDY02818 | Canola | nucleus | 13.56 | 26.36 |
| CDY37024 | Canola | cytosol, mitochondrion | 6.51 | 25.93 |
| CDY32702 | Canola | nucleus | 13.87 | 25.87 |
| CDY60185 | Canola | nucleus | 16.34 | 24.56 |
| CDY40514 | Canola | nucleus | 16.19 | 24.27 |
| CDY26898 | Canola | nucleus | 16.34 | 20.21 |
| CDY32278 | Canola | endoplasmic reticulum | 16.34 | 20.21 |
| CDY39917 | Canola | nucleus | 22.08 | 20.17 |
| CDY29164 | Canola | nucleus | 22.23 | 20.15 |
| CDX83624 | Canola | nucleus | 16.65 | 19.28 |
| CDY13640 | Canola | nucleus | 16.73 | 19.2 |
| CDY23802 | Canola | nucleus | 7.67 | 18.86 |
| CDY63687 | Canola | nucleus, plastid | 15.41 | 17.93 |
| CDX91151 | Canola | nucleus | 16.89 | 17.45 |
| CDX85676 | Canola | nucleus | 16.81 | 17.39 |
| CDY48353 | Canola | nucleus | 14.79 | 15.62 |
| CDY34159 | Canola | nucleus | 14.79 | 15.44 |
| CDX78376 | Canola | plastid | 16.81 | 12.35 |
| CDX81170 | Canola | plastid | 16.73 | 12.25 |
| CDX69841 | Canola | plastid | 16.73 | 12.22 |
| CDX96996 | Canola | nucleus | 16.65 | 12.15 |
| CDY51663 | Canola | nucleus | 0.54 | 11.11 |
| CDX91491 | Canola | nucleus | 0.54 | 11.11 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:1.25.40.20 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078E9U1 |
| InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | EnsemblPlants:CDX97797 | ProteinID:CDX97797 | ProteinID:CDX97797.1 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00105099001 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001374 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR020683 |
| InterPro:IPR036770 | InterPro:IPR036867 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01424 |
| PFAM:PF04408 | PFAM:PF07717 | PFscan:PS50297 | PFscan:PS51061 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF100 | InterPro:R3H_DEXH_helicase | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF48403 | SUPFAM:SSF52540 | SUPFAM:SSF82708 |
| UniParc:UPI0004EE352F | SEG:seg | : | : | : | : |
Description
BnaC04g41420D
Coordinates
chrLK031901:+:540755..546654
Molecular Weight (calculated)
143660.0 Da
IEP (calculated)
8.579
GRAVY (calculated)
-0.456
Length
1291 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGNKRFRSEN AAGKPSSVEA TRIWASKVIE DFRASGNEVY TFGHNLSNTE RGVIHQMCRK MGIQSKSSGQ GNQRRLSIFK DMYRNGKNKG AKEKSRNREK
0101: LRCVSFPPEA DAILQELFTY YPPCDGDTAA TSFNKYVGNS CKQGQWKDDF FRKPLMSGDE ILDKVASLSS RLRSDRALQE ISKLRSRLPI TSFRDAITSA
0201: VESNQVILIS GETGCGKTTQ VPQYLLDHMW ASKRETCKIV CTQPRRISAM SVSERISCER GESIGDNIGY KVRLQSKGGR HSSVVFCTNG ILLRVLVGKG
0301: SGSYVSDITH IIVDEIHERD CYSDFMLAII RDLLPSNPHL RLILMSATLD AERFSGYFGG CPVVRVPGFT YPVRTLYLED VLSILKSGGD NHLSSANLST
0401: PDQKFYLTDE DKLALDEAII LAWTNDEFDA LLDLVSSRGS PEIYNYQHQS TLLSPLMVFA GKGRISDVCM LLSFGADCNL KSKDGMTALE MAETENQLEA
0501: AQIIREHAES SQSNSQQAQQ ILDKYMATIN PEQVDVSLIQ QLMRKICGDS EDGGAILVFL PGWDDINKTR QRLLDSPFFS DGSKFNIICL HSMVPAGEQK
0601: KVFSRPPRGC RKIVLATNIA ESAVTIDDVV YVIDSGRMKE KSYDPYSNVS TLQSSWVSKA NAKQREGRAG RCQPGICYHL YSRLRAASMP DFKVPEIKRM
0701: PVEELCLQVK ILDPNCKTND FLQKLLDPPV DQSIANALSI LQDIGALTPE EELTELGEKF GHLPVHPLIS KMLFFAVLVN CLDPALTLAC AADYKEPFTM
0801: PMSPVERQKA ATAKLELASL CGGDSDHLAV VAAFDCWKNA KERGLAAEFC SQYFVSPSAM KMLDQMRSQL ESELKRHGII PYDISSCSQN SRDPGILRAV
0901: LAVGLYPMVG RLCPSFGNNR RSLVETVSGA KVRVHSLSNN FNLSSRKYDE SLVVFDEITR GDGGMHIRNC TVARDLPLLL VSTEIAVAPT VSSEADDNNS
1001: NEEGMNIHKA ESRREQNMMS SPENSVKLVV DRWLPYRTTA LEVAQMYILR ERLTASILFK VRHPRENLPP HLGASMYAIA RILSYDGHAG LSSPSESMRP
1101: KHSRAEMYET GGWEEKPNSF LNSLFWSLSL RENKPSSSGH VNRNPQHGFN TVQTEVASMH TQQNIKQRNP KAANNGDSGK KKEKMYVNHT NGIHQPEAAS
1201: IAKQSKHKSA NSLSLGNKKE NMPSDQVYGN QQPNSAPREA ASPVAKHQIS KKTKNRPANN SDFGKKKTQY VPKIDLHKKE REGKVEQKGN A
0101: LRCVSFPPEA DAILQELFTY YPPCDGDTAA TSFNKYVGNS CKQGQWKDDF FRKPLMSGDE ILDKVASLSS RLRSDRALQE ISKLRSRLPI TSFRDAITSA
0201: VESNQVILIS GETGCGKTTQ VPQYLLDHMW ASKRETCKIV CTQPRRISAM SVSERISCER GESIGDNIGY KVRLQSKGGR HSSVVFCTNG ILLRVLVGKG
0301: SGSYVSDITH IIVDEIHERD CYSDFMLAII RDLLPSNPHL RLILMSATLD AERFSGYFGG CPVVRVPGFT YPVRTLYLED VLSILKSGGD NHLSSANLST
0401: PDQKFYLTDE DKLALDEAII LAWTNDEFDA LLDLVSSRGS PEIYNYQHQS TLLSPLMVFA GKGRISDVCM LLSFGADCNL KSKDGMTALE MAETENQLEA
0501: AQIIREHAES SQSNSQQAQQ ILDKYMATIN PEQVDVSLIQ QLMRKICGDS EDGGAILVFL PGWDDINKTR QRLLDSPFFS DGSKFNIICL HSMVPAGEQK
0601: KVFSRPPRGC RKIVLATNIA ESAVTIDDVV YVIDSGRMKE KSYDPYSNVS TLQSSWVSKA NAKQREGRAG RCQPGICYHL YSRLRAASMP DFKVPEIKRM
0701: PVEELCLQVK ILDPNCKTND FLQKLLDPPV DQSIANALSI LQDIGALTPE EELTELGEKF GHLPVHPLIS KMLFFAVLVN CLDPALTLAC AADYKEPFTM
0801: PMSPVERQKA ATAKLELASL CGGDSDHLAV VAAFDCWKNA KERGLAAEFC SQYFVSPSAM KMLDQMRSQL ESELKRHGII PYDISSCSQN SRDPGILRAV
0901: LAVGLYPMVG RLCPSFGNNR RSLVETVSGA KVRVHSLSNN FNLSSRKYDE SLVVFDEITR GDGGMHIRNC TVARDLPLLL VSTEIAVAPT VSSEADDNNS
1001: NEEGMNIHKA ESRREQNMMS SPENSVKLVV DRWLPYRTTA LEVAQMYILR ERLTASILFK VRHPRENLPP HLGASMYAIA RILSYDGHAG LSSPSESMRP
1101: KHSRAEMYET GGWEEKPNSF LNSLFWSLSL RENKPSSSGH VNRNPQHGFN TVQTEVASMH TQQNIKQRNP KAANNGDSGK KKEKMYVNHT NGIHQPEAAS
1201: IAKQSKHKSA NSLSLGNKKE NMPSDQVYGN QQPNSAPREA ASPVAKHQIS KKTKNRPANN SDFGKKKTQY VPKIDLHKKE REGKVEQKGN A
0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
Arabidopsis Description
HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.