CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009414.1-P	Field mustard	mitochondrion	99.74	99.83
CDX98799	Canola	mitochondrion	99.39	99.57
AT5G04895.1	Thale cress	mitochondrion	94.03	93.63
KRH44757	Soybean	plastid	80.45	80.1
Solyc01g006710.2.1	Tomato	mitochondrion	78.2	77.66
PGSC0003DMT400055091	Potato	mitochondrion	77.85	77.32
Os03t0748800-01	Rice	mitochondrion	75.69	76.09
GSMUA_Achr4P07530_001	Banana	mitochondrion	76.56	75.97
KXG37551	Sorghum	nucleus, vacuole	75.35	75.61
TraesCS5D01G397600.1	Wheat	nucleus	74.83	75.22
TraesCS5B01G392800.1	Wheat	nucleus	74.83	75.22
TraesCS5A01G387700.2	Wheat	golgi, nucleus	74.74	74.81
HORVU5Hr1G094990.5	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	74.31	74.7
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	75.43	72.73
CDX93688	Canola	plastid	59.0	57.8
CDY40601	Canola	nucleus, plastid	58.91	57.66
CDY17694	Canola	nucleus	55.36	56.39
CDY57512	Canola	nucleus	55.28	56.3
CDX84588	Canola	plastid, vacuole	40.83	45.6
CDX79642	Canola	nucleus, vacuole	40.66	45.41
CDY68405	Canola	nucleus	20.5	35.37
CDX74059	Canola	nucleus	7.96	34.85
CDX74061	Canola	cytosol	9.52	34.27
CDX76626	Canola	nucleus	19.98	32.17
CDY11413	Canola	nucleus	19.98	32.17
CDX83337	Canola	cytosol	20.07	32.09
CDX95715	Canola	cytosol	19.98	31.86
CDY23338	Canola	cytosol	10.99	30.09
CDX90112	Canola	nucleus	17.99	29.5
CDY11762	Canola	nucleus	17.91	29.4
CDY36075	Canola	nucleus	17.04	29.23
CDY34567	Canola	nucleus	16.7	29.11
CDX78859	Canola	nucleus	17.47	28.94
CDX99466	Canola	nucleus	17.47	28.86
CDY37024	Canola	cytosol, mitochondrion	7.96	28.4
CDY10756	Canola	nucleus	26.56	28.19
CDX85017	Canola	cytosol, plastid	17.47	27.98
CDY16154	Canola	nucleus, plastid	17.47	27.94
CDY60185	Canola	nucleus	19.98	26.89
CDY40514	Canola	nucleus	19.72	26.48
CDY32702	Canola	nucleus	15.83	26.45
CDY02818	Canola	nucleus	14.97	26.05
CDY10215	Canola	nucleus	26.82	24.14
CDX97797	Canola	nucleus	26.82	24.01
CDY29644	Canola	nucleus	27.08	23.95
CDY39917	Canola	nucleus	28.98	23.71
CDY29164	Canola	nucleus	29.15	23.67
CDY32278	Canola	endoplasmic reticulum	20.76	22.99
CDY26898	Canola	nucleus	20.76	22.99
CDX83624	Canola	nucleus	21.97	22.78
CDY13640	Canola	nucleus	22.06	22.67
CDX91151	Canola	nucleus	22.23	20.58
CDX85676	Canola	nucleus	22.15	20.51
CDY63687	Canola	nucleus, plastid	19.38	20.18
CDY23802	Canola	nucleus	8.82	19.43
CDY48353	Canola	nucleus	18.25	17.25
CDY34159	Canola	nucleus	18.34	17.14
CDX81170	Canola	plastid	21.97	14.41
CDX78376	Canola	plastid	21.8	14.34
CDX69841	Canola	plastid	21.45	14.04
CDX96996	Canola	nucleus	21.37	13.96
CDY51663	Canola	nucleus	0.61	11.11
CDX91491	Canola	nucleus	0.61	11.11

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078C0B8	EnsemblPlants:CDX70187
ProteinID:CDX70187	ProteinID:CDX70187.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00136308001	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014720	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF103	SMART:SM00358
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF54768	UniParc:UPI0004EF2BD0
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

BnaA10g25360D

Coordinates

chrLK031790:-:3462198..3467488

Molecular Weight (calculated)

130125.0 Da

IEP (calculated)

8.865

GRAVY (calculated)

-0.351

Length

1156 amino acids

Sequence
(BLAST)

0001: MRFTKRISFF LWQATKLPTR SLPRNPSLCR SYHIVGAPIS SGDVVKGLSY GQICRRFIGY TAEQFSDDEY ECEFEEHKAS SSVANVDEWK WKLGILLAND
0101: SEREIVSRDK RDRRDYEQIS NLAKRMGLYS EIYGKVVVAS KVPLPNYRPD LDDKRPQREV VLPLSLQRRV EGLLQEHLDR QQLNSGKANE SEADSQPPKQ
0201: TEELPDESSD AFLDGSVMEK VLQRRSMRMR NMQRAWQESP EGRTMLEFRK SLPSFKDKER LLQAIARNQV IVVSGETGCG KTTQLPQYIL ESEIESGRGA
0301: FCNIICTQPR RISAMAVAER VSAERGEPLG ETVGFKVRLE GMRGKNTQLL FCTSGILLRR LLSDRNLNGI THVFVDEIHE RGMNEDFLII VLKELLPRRP
0401: DLRLVLMSAT LNAELFSNYF GGAPTIHIPG FTHPVKAHFL EDVLEMTGYK LTSFNQVDDY GQEKTWKTQK QLMPRKRKNQ ITSLVEEALS KSTFESYSSR
0501: TRDSLSSWMP DCVGFNLIEA VLCHICRKER PGAVLVFLTG WDDISSLRDQ IKAHPLLGDP NRVLLLMCHG SMATAEQRLI FERAPPNIRK IVLATNMAEA
0601: SITINDVVFV VDCGKAKETT YDALNNTPCL LPSWISQASA RQRRGRAGRL LPGECYHLYP KCVYEAFSEY QLPELLRTPL NSLCLQIKSL QVESIAGFLS
0701: AALQAPEPLT VQNAIGFLKM IGALDEKENL TDLGKLLSIL PVDPKLGKML IMGAIFHCFD PILTIVSGLS VRDPFLLPQE KKDLALSAKL RFSAKDYSDH
0801: MALVRAFEGW KNAEREGSAY EYCWRNFLSA QTLQAIHSLR KQFNYILKEA GLVHDDSALN NKLSHNQSLV RAVICSGLFP GIASVVHRET SMSFKTMDDG
0901: QVSLYANSVN SRFPTIPYPW LVFGEKVKVN AVLIRDSTGV PDSSLILFGG ALSTGVQVGH LKMLDGYIDF FMDPNLADSY VKLKEELNKL LQKKANPSVD
1001: IHKEGKYLML AVQELVAGDQ CEGRFVFGRD TKRATSQPQL AGENNKLSKD GTNPKSLLQT LLMRAGHSPP KYKTKHLKTN EFRALVEFKG MQFVGKPQRN
1101: KTLAEKDAAV EALAWLTHTS DNSTDQYSGD ADSPPDVTDN MLKLLGGKRR RRSKGK

Best Arabidopsis Sequence Match ( AT5G04895.1 )
(BLAST)

0001: MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK
0101: LGILLANDSE QEIVSRDKRD RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG LLQEHLDSQQ LSSGKANECV
0201: ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES
0301: EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL
0401: KELLPRRPDL RLVLMSATLN AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL MPRKRKNQIT TLVEEALSKS
0501: NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV
0601: LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV
0701: ESIAEFLSAA LQAPESLAVQ NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR DPFLLPQDKK DLALSAKLRF
0801: SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM
0901: SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ
1001: KKLEDPSMDI HKEGKYLMLA VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT KHLKTNEFRA LVEFKGMQFV
1101: GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP PDVTDNMLKL LGGRRRRSKG K

Arabidopsis Description

ATP-dependent RNA helicase A-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF84]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.