Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001238.1-P | Field mustard | cytosol, mitochondrion | 93.18 | 93.18 |
| CDX74061 | Canola | cytosol | 87.88 | 72.27 |
| Os03t0314100-01 | Rice | cytosol, nucleus, plastid | 62.12 | 29.08 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 38.26 | 28.37 |
| CDY68405 | Canola | nucleus | 64.39 | 25.37 |
| KRH31768 | Soybean | cytosol, nucleus | 54.17 | 24.78 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 64.02 | 23.5 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 64.02 | 23.44 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 64.02 | 23.44 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 64.02 | 23.44 |
| CDX76626 | Canola | nucleus | 63.64 | 23.4 |
| CDX83337 | Canola | cytosol | 64.02 | 23.37 |
| CDY11413 | Canola | nucleus | 63.26 | 23.26 |
| CDX95715 | Canola | cytosol | 63.64 | 23.17 |
| Zm00001d028923_P002 | Maize | nucleus | 63.26 | 23.16 |
| KXG39505 | Sorghum | cytosol | 63.26 | 23.13 |
| KRH68290 | Soybean | nucleus | 62.88 | 23.06 |
| KRG96553 | Soybean | nucleus | 62.88 | 23.02 |
| KRH69191 | Soybean | nucleus | 62.5 | 22.85 |
| VIT_07s0005g01770.t01 | Wine grape | nucleus | 62.12 | 22.53 |
| Solyc01g079250.2.1 | Tomato | nucleus | 61.36 | 22.41 |
| PGSC0003DMT400023284 | Potato | nucleus | 61.36 | 22.41 |
| Zm00001d047601_P006 | Maize | nucleus | 62.5 | 21.35 |
| CDX99466 | Canola | nucleus | 43.94 | 16.57 |
| CDX78859 | Canola | nucleus | 43.56 | 16.48 |
| CDY11762 | Canola | nucleus | 41.67 | 15.62 |
| CDX90112 | Canola | nucleus | 41.67 | 15.6 |
| CDY34567 | Canola | nucleus | 38.26 | 15.23 |
| CDY16154 | Canola | nucleus, plastid | 41.29 | 15.08 |
| CDY36075 | Canola | nucleus | 38.26 | 14.99 |
| CDY23802 | Canola | nucleus | 29.55 | 14.86 |
| CDX85017 | Canola | cytosol, plastid | 40.53 | 14.82 |
| CDY32702 | Canola | nucleus | 38.26 | 14.6 |
| CDY60185 | Canola | nucleus | 45.83 | 14.09 |
| CDY40514 | Canola | nucleus | 45.45 | 13.94 |
| CDY37024 | Canola | cytosol, mitochondrion | 16.67 | 13.58 |
| CDY02818 | Canola | nucleus | 32.58 | 12.95 |
| CDY26898 | Canola | nucleus | 48.11 | 12.16 |
| CDY32278 | Canola | endoplasmic reticulum | 48.11 | 12.16 |
| CDX83624 | Canola | nucleus | 46.97 | 11.12 |
| CDY13640 | Canola | nucleus | 46.97 | 11.02 |
| CDY23338 | Canola | cytosol | 15.91 | 9.95 |
| CDX79642 | Canola | nucleus, vacuole | 37.5 | 9.57 |
| CDX84588 | Canola | plastid, vacuole | 37.5 | 9.57 |
| CDX85676 | Canola | nucleus | 40.91 | 8.65 |
| CDX91151 | Canola | nucleus | 40.91 | 8.65 |
| CDX98799 | Canola | mitochondrion | 34.85 | 7.97 |
| CDX70187 | Canola | mitochondrion | 34.85 | 7.96 |
| CDY48353 | Canola | nucleus | 35.98 | 7.77 |
| CDY34159 | Canola | nucleus | 35.98 | 7.68 |
| CDX93688 | Canola | plastid | 33.33 | 7.46 |
| CDY40601 | Canola | nucleus, plastid | 33.33 | 7.45 |
| CDY10756 | Canola | nucleus | 29.55 | 7.16 |
| CDY57512 | Canola | nucleus | 30.68 | 7.14 |
| CDY17694 | Canola | nucleus | 30.3 | 7.05 |
| CDY63687 | Canola | nucleus, plastid | 28.41 | 6.76 |
| CDY10215 | Canola | nucleus | 31.06 | 6.39 |
| CDX97797 | Canola | nucleus | 29.17 | 5.96 |
| CDY29644 | Canola | nucleus | 29.17 | 5.89 |
| CDY39917 | Canola | nucleus | 29.17 | 5.45 |
| CDY29164 | Canola | nucleus | 29.17 | 5.41 |
| CDX69841 | Canola | plastid | 35.23 | 5.26 |
| CDX96996 | Canola | nucleus | 35.23 | 5.26 |
| CDX81170 | Canola | plastid | 34.47 | 5.16 |
| CDX78376 | Canola | plastid | 34.09 | 5.12 |
| CDX91491 | Canola | nucleus | 0.0 | 0.0 |
| CDY51663 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX74059 | EnsemblPlantsGene:GSBRNA2T00111806001 | Gene3D:1.10.10.2130 | Gene3D:3.40.50.300 | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:P-loop_NTPase | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF193 | PFAM:PF00271 | PFscan:PS51194 | ProteinID:CDX74059 |
| ProteinID:CDX74059.1 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EE31EE | MapMan:35.1 | : |
Description
BnaA03g29880D
Coordinates
chrLK031800:-:1134196..1134990
Molecular Weight (calculated)
29875.9 Da
IEP (calculated)
4.907
GRAVY (calculated)
-0.104
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MSATLQAFNR EYFRGAPLIK VPSDRLLHPV EILYTREPVM DYLESAISKV IEIHMCEPTG DVLVFLTGEE EIEHACSRIV RSLGDQVTVV PLYSSLPSAL
101: QHKIFYPTPP PHSVRKIIVS TNVAETSLSM DGIVYVVDPG FSKQKNYSFL TSDEFWSVSR ISQASAYQRA GRAGEKCFRL YTEKTFNDFM DGETPEILRS
201: NLVKTVLTLK RLGVDDLTFF EYIDPPCTRM LLRALTDLFH LGAVDDQGNL TNIDHMMESL EEPL
101: QHKIFYPTPP PHSVRKIIVS TNVAETSLSM DGIVYVVDPG FSKQKNYSFL TSDEFWSVSR ISQASAYQRA GRAGEKCFRL YTEKTFNDFM DGETPEILRS
201: NLVKTVLTLK RLGVDDLTFF EYIDPPCTRM LLRALTDLFH LGAVDDQGNL TNIDHMMESL EEPL
001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.