Factsheet for HORVU4Hr1G052730.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G082970.1
HORVU3Hr1G064370.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62310.1	HORVU1Hr1G082970.1	AT1G17970.1	21798944
AT3G62310.1	HORVU3Hr1G064370.1	AT1G17970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G124200.2	Wheat	cytosol	99.45	99.72
TraesCS4D01G181700.1	Wheat	cytosol	99.58	99.58
TraesCS4B01G180200.1	Wheat	cytosol	99.45	99.45
KXG39505	Sorghum	cytosol	95.56	95.43
Zm00001d028923_P002	Maize	nucleus	94.59	94.59
Os03t0314100-01	Rice	cytosol, nucleus, plastid	71.01	90.78
KRG96553	Soybean	nucleus	88.35	88.35
Zm00001d047601_P006	Maize	nucleus	94.59	88.23
KRH68290	Soybean	nucleus	87.93	88.06
KRH69191	Soybean	nucleus	87.93	87.81
Bra000445.1-P	Field mustard	cytosol	87.79	87.55
CDX83337	Canola	cytosol	87.79	87.55
VIT_07s0005g01770.t01	Wine grape	nucleus	88.21	87.36
CDX76626	Canola	nucleus	86.69	87.05
AT2G47250.1	Thale cress	nucleus	87.93	86.97
CDX95715	Canola	cytosol	87.38	86.9
CDY11413	Canola	nucleus	86.27	86.63
Bra007671.1-P	Field mustard	nucleus	86.27	86.63
PGSC0003DMT400023284	Potato	nucleus	86.55	86.31
Solyc01g079250.2.1	Tomato	nucleus	86.41	86.17
AT3G62310.1	Thale cress	nucleus	86.55	85.95
GSMUA_Achr1P18470_001	Banana	cytosol	40.78	82.58
KRH31768	Soybean	cytosol, nucleus	65.19	81.46
Bra003744.1-P	Field mustard	nucleus	74.34	80.0
CDY68405	Canola	nucleus	73.65	79.25
AT5G14900.1	Thale cress	cytosol	30.24	72.43
CDX74061	Canola	cytosol	29.13	65.42
CDX74059	Canola	nucleus	23.44	64.02
Bra001237.1-P	Field mustard	cytosol	37.86	63.19
Bra001238.1-P	Field mustard	cytosol, mitochondrion	22.88	62.5
HORVU3Hr1G028550.17	Barley	cytosol	39.94	41.32
HORVU7Hr1G032080.3	Barley	plastid	40.22	35.41
HORVU1Hr1G056370.1	Barley	nucleus	48.41	32.83
HORVU1Hr1G056400.1	Barley	nucleus	48.41	32.77
HORVU4Hr1G088270.17	Barley	mitochondrion	46.88	31.3
HORVU0Hr1G007860.1	Barley	nucleus	50.21	29.15
HORVU1Hr1G039880.1	Barley	nucleus	34.4	26.24
HORVU2Hr1G047870.2	Barley	nucleus	40.64	23.2
HORVU5Hr1G094990.5	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	32.32	20.26
HORVU3Hr1G002800.8	Barley	mitochondrion	32.32	18.68
HORVU0Hr1G039590.6	Barley	nucleus	32.87	18.41
HORVU3Hr1G074660.7	Barley	plastid	28.85	16.33
HORVU5Hr1G019730.1	Barley	nucleus, plastid	30.24	12.76
HORVU2Hr1G030040.17	Barley	nucleus	31.07	12.27

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	ncoils:Coil	InterPro:DUF1605
GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0016787	EnsemblPlantsGene:HORVU4Hr1G052730	EnsemblPlants:HORVU4Hr1G052730.3
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M0XMQ9
InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFAM:PF13401	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI0002967D2D	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:438147590..438151460

Molecular Weight (calculated)

81637.4 Da

IEP (calculated)

7.900

GRAVY (calculated)

-0.342

Length

721 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVVDKTSV SSKLGRAGIN GAAAAAAANP SINRWNGRPY SARYLEILEK RRTLPVWQQK DEFLRVLRDN QTLILVGETG SGKTTQIPQF
101: VLEAEGLSNR SMVACTQPRR VAAMSVSRRV AEEMDVTIGE EVGYSIRFED CSSHKTVLKY LTDGMLLREA MADPLLERYK VIVLDEAHER TLATDVLFGL
201: LKEVLKNRPD LKLVVMSATL EAEKFQGYFS GAPLMKVPGR LHPVEIFYTQ EPERDYLEAA IRTVVQIHMC EPAGDILVFL TGEEEIEDAC RKINKEVNNM
301: GDQVGPVKVV PLYSTLPPAM QQKIFDPAPP PLKEGGPAGR KIVVSTNIAE TSLTIDGIVY VIDPGFSKQK VYNPRIRVES LLVSPISKAS AHQRAGRAGR
401: TQPGKCFRLY TEKSFNGDLQ PQTYPEILRS NLANTVLTLK KLGIDDLVHF DFMDPPAPET LMRALEVLNY LGALDDEGNL TSLGEMMSEF PLDPQMSKML
501: VISPRYNCSN EILSISAMLS VPNCFLRPRE AQKAADEAKA RFGHIDGDHL TLLNVYHAYK QNNEDPTWCY ENFVNARAMK SADNVRQQLV RIMTRFNLKM
601: CSTDFNSREY YVNIRKAMLS GYFMQVAHLE RTGHYLTVKD NQVVHLHPSN CMDHKPEWVI YNEYVLTTRN FIRTVTDIRG EWLIDIAPQY YDLTNFPSCE
701: AKRVLERLHN KRERERAASR N

Best Arabidopsis Sequence Match ( AT2G47250.1 )
(BLAST)

001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.