Factsheet for Bra007671.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016574.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62310.1	Bra016574.1-P	AT1G17970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11413	Canola	nucleus	99.16	99.16
AT3G62310.1	Thale cress	nucleus	94.29	93.25
Bra000445.1-P	Field mustard	cytosol	91.78	91.15
KRH69191	Soybean	nucleus	88.44	87.95
KRG96553	Soybean	nucleus	88.02	87.66
KRH68290	Soybean	nucleus	87.74	87.5
PGSC0003DMT400023284	Potato	nucleus	87.47	86.86
Solyc01g079250.2.1	Tomato	nucleus	87.33	86.72
VIT_07s0005g01770.t01	Wine grape	nucleus	87.88	86.68
TraesCS4A01G124200.2	Wheat	cytosol	86.63	86.51
TraesCS4D01G181700.1	Wheat	cytosol	86.63	86.27
HORVU4Hr1G052730.3	Barley	cytosol	86.63	86.27
TraesCS4B01G180200.1	Wheat	cytosol	86.49	86.13
KXG39505	Sorghum	cytosol	86.07	85.6
Zm00001d028923_P002	Maize	nucleus	85.38	85.02
KRH31768	Soybean	cytosol, nucleus	66.43	82.67
Bra003744.1-P	Field mustard	nucleus	76.74	82.24
Os03t0314100-01	Rice	cytosol, nucleus, plastid	63.93	81.38
GSMUA_Achr1P18470_001	Banana	cytosol	39.69	80.06
Zm00001d047601_P006	Maize	nucleus	85.1	79.04
Bra001237.1-P	Field mustard	cytosol	38.44	63.89
Bra001238.1-P	Field mustard	cytosol, mitochondrion	22.56	61.36
Bra040328.1-P	Field mustard	cytosol, mitochondrion	14.76	49.53
Bra013313.1-P	Field mustard	nucleus	41.78	43.04
Bra011023.1-P	Field mustard	nucleus	39.0	40.64
Bra024720.1-P	Field mustard	nucleus	40.95	39.95
Bra010915.1-P	Field mustard	nucleus	38.58	39.29
Bra038498.1-P	Field mustard	nucleus	46.52	37.07
Bra010168.1-P	Field mustard	nucleus	48.47	33.33
Bra025211.1-P	Field mustard	nucleus	50.14	30.74
Bra040091.1-P	Field mustard	nucleus	27.58	25.03
Bra023387.1-P	Field mustard	nucleus	41.36	23.8
Bra023043.1-P	Field mustard	nucleus	32.45	23.42
Bra024903.1-P	Field mustard	nucleus	32.17	20.35
Bra018747.1-P	Field mustard	plastid	33.15	20.17
Bra009414.1-P	Field mustard	mitochondrion	32.17	20.0
Bra032998.1-P	Field mustard	nucleus	32.31	18.76
Bra021665.1-P	Field mustard	nucleus	28.83	15.86
Bra018293.1-P	Field mustard	plasma membrane, vacuole	28.69	15.61
Bra009038.1-P	Field mustard	plastid	31.48	12.79
Bra006057.1-P	Field mustard	plastid	31.2	12.76
Bra027890.1-P	Field mustard	nucleus	23.4	12.63

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra007671	EnsemblPlants:Bra007671.1	EnsemblPlants:Bra007671.1-P
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4CTX7
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI0002542ABF	SEG:seg	:	:	:

Description

AT3G62310 (E=0.0) | RNA helicase, putative

Coordinates

chrA09:-:30341930..30344879

Molecular Weight (calculated)

81766.5 Da

IEP (calculated)

7.472

GRAVY (calculated)

-0.378

Length

718 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVMDNPSA PKVAKFNGLV DCGMNKWNGK PYSAKYYEIL EKRRTLPVWL QKEEFLKTLK DNQTIILVGE TGSGKTTQIP QFVIDAVDAE
101: SSDRKWLVAC TQPRRVAAMS VSRRVADEMD VAIGEEVGYS IRFEDCSSPR TVLKYLTDGM LLREAMADPL LERYKVIILD EAHERTLATD VLFGLLKEVL
201: RNRPDLKLVV MSATLEAEKF QEYFSGAPLM KVPGRLHPVE IFYTQEPERD YLEAAIRTVV QIHMCEPPGD ILVFLTGEEE IEDACRKINK EVGNLGDQVG
301: PVKVVPLYST LPPAMQQKIF DAAPEPVTKG GPPGRKIVVS TNIAETSLTI DGIVYVIDPG FAKQKVYNPR IRVESLLVSP ISKASAHQRS GRAGRTRPGK
401: CFRLYTEKSF NNDLQPQTYP EILRSNLANT VLTLKKLGID DLVHFDFMDP PAPETLMRAL EVLNYLGALD DEGNLTRTGE IMSEFPLDPQ MAKMLIVSPE
501: FNCSNEILSV SAMLSVPNCF LRPREYQKAA DEAKAKFGHI DGDHLTLLNV YHAFKQNNED PNWCYENYIN NRAMKSADNV RQQLVRIMSR FNLKICSTDF
601: NSRDYYINIR KAMLAGYFMQ VAHLERAGSY LTVKDNQVVN LHPSNCLDHK PEWVIYNEYV LTTRNYIRTV TDIRGEWLVD VAPHYYDLTN FPNCEAKRVL
701: EKLYKKRERE KADSKNRK

Best Arabidopsis Sequence Match ( AT3G62310.1 )
(BLAST)

001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.