Factsheet for Bra010915.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90112	Canola	nucleus	99.86	99.86
AT1G27900.1	Thale cress	nucleus	91.49	92.14
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	40.99	82.81
KRH58751	Soybean	nucleus	76.45	77.33
VIT_01s0010g02780.t01	Wine grape	nucleus	69.36	76.41
Solyc05g015040.2.1	Tomato	nucleus	75.6	76.14
TraesCS4B01G075500.1	Wheat	nucleus	71.49	71.49
TraesCS4D01G074200.1	Wheat	nucleus	71.49	71.49
Os11t0310800-01	Rice	nucleus	71.77	71.47
TraesCS4A01G239500.2	Wheat	nucleus	71.35	71.35
EER87951	Sorghum	nucleus, plastid	70.78	70.78
Zm00001d045147_P015	Maize	nucleus	70.64	70.54
GSMUA_Achr2P20940_001	Banana	nucleus	61.42	64.53
Bra001237.1-P	Field mustard	cytosol	25.96	42.36
Bra001238.1-P	Field mustard	cytosol, mitochondrion	15.6	41.67
Bra040328.1-P	Field mustard	cytosol, mitochondrion	12.2	40.19
Bra003744.1-P	Field mustard	nucleus	38.16	40.15
Bra007671.1-P	Field mustard	nucleus	39.29	38.58
Bra000445.1-P	Field mustard	cytosol	38.72	37.76
Bra011023.1-P	Field mustard	nucleus	35.18	35.99
Bra013313.1-P	Field mustard	nucleus	35.46	35.87
Bra024720.1-P	Field mustard	nucleus	35.89	34.38
Bra038498.1-P	Field mustard	nucleus	40.14	31.41
Bra010168.1-P	Field mustard	nucleus	40.14	27.11
Bra025211.1-P	Field mustard	nucleus	41.42	24.94
Bra023387.1-P	Field mustard	nucleus	40.14	22.68
Bra023043.1-P	Field mustard	nucleus	29.36	20.8
Bra040091.1-P	Field mustard	nucleus	22.55	20.1
Bra024903.1-P	Field mustard	nucleus	30.64	19.03
Bra018747.1-P	Field mustard	plastid	30.64	18.31
Bra009414.1-P	Field mustard	mitochondrion	29.5	18.01
Bra032998.1-P	Field mustard	nucleus	31.35	17.87
Bra021665.1-P	Field mustard	nucleus	27.94	15.1
Bra018293.1-P	Field mustard	plasma membrane, vacuole	27.66	14.77
Bra006057.1-P	Field mustard	plastid	31.77	12.76
Bra027890.1-P	Field mustard	nucleus	23.83	12.63
Bra009038.1-P	Field mustard	plastid	31.35	12.51

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	EnsemblPlantsGene:Bra010915	EnsemblPlants:Bra010915.1
EnsemblPlants:Bra010915.1-P	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4D362	InterPro:P-loop_NTPase	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	PFAM:PF13401	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF131	SMART:SM00382	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI0002545886	SEG:seg	:	:	:

Description

AT1G27900 (E=0.0) | RNA helicase, putative

Coordinates

chrA08:+:17085571..17089710

Molecular Weight (calculated)

79190.2 Da

IEP (calculated)

8.072

GRAVY (calculated)

-0.352

Length

705 amino acids

Sequence
(BLAST)

001: MANLPILQFE EKIVETVENN PVVVIIGETG SGKSTQLSQI LRRHGYTKSG VIAVTQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TSNKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLM KRLVRIRSSN FKVLITSATL DGEKVSRFFS GCPVLNVPGK LYPVEILYSK ERPGSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SKLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVAT NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMYSLDVTQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDLLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYLIDAI DENGAITNIG RTMSELPLEP SLSRTLIEAN ESGCLSQALT VVAMLSAETT LLPGRSKPNE KKRKRDEESN LPDGSGFGDH IQLLQIFECW
501: DSNNYDIRWC KENDLQVRGM VFVRDVRRQL CQIMQKISKD RLEVGARGRK SSSREEYRKL RKALCVGNAN QVAERMLRHN GFRTLTFKPQ LVQVHPASVL
601: STDQDGMLPN YVVYHELIST TRPFMRNVCS VEMSWVAPIK RKIEKLDVRK LSGGPDNSFK EPEEKKQNTE LSTNTNTAET PTVSENVESR IEAARERFLA
701: RKGQK

Best Arabidopsis Sequence Match ( AT1G27900.1 )
(BLAST)

001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.