Factsheet for Zm00001d045147_P015

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87951	Sorghum	nucleus, plastid	95.47	95.6
Os11t0310800-01	Rice	nucleus	90.37	90.11
TraesCS4B01G075500.1	Wheat	nucleus	88.81	88.94
TraesCS4D01G074200.1	Wheat	nucleus	88.39	88.51
TraesCS4A01G239500.2	Wheat	nucleus	88.24	88.37
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	38.53	77.94
VIT_01s0010g02780.t01	Wine grape	nucleus	66.29	73.12
KRH58751	Soybean	nucleus	70.82	71.74
Bra010915.1-P	Field mustard	nucleus	70.54	70.64
CDX90112	Canola	nucleus	70.54	70.64
AT1G27900.1	Thale cress	nucleus	69.83	70.43
CDY11762	Canola	nucleus	70.11	70.31
Solyc05g015040.2.1	Tomato	nucleus	69.55	70.14
GSMUA_Achr2P20940_001	Banana	nucleus	62.61	65.87
Zm00001d028923_P002	Maize	nucleus	36.97	36.2
Zm00001d011963_P002	Maize	plasma membrane	35.13	34.4
Zm00001d047601_P006	Maize	nucleus	36.83	33.64
Zm00001d049980_P001	Maize	plasma membrane	32.72	33.09
Zm00001d045376_P001	Maize	cytosol	13.31	28.48
Zm00001d019056_P001	Maize	nucleus	6.8	24.0
Zm00001d039380_P001	Maize	nucleus	32.01	23.86
Zm00001d015893_P001	Maize	nucleus, plasma membrane	41.5	23.71
Zm00001d031581_P002	Maize	nucleus	40.65	21.68
Zm00001d006459_P003	Maize	plastid	40.09	21.03
Zm00001d032735_P001	Maize	plastid	30.59	20.89
Zm00001d017967_P003	Maize	nucleus	32.44	17.9
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	29.46	17.35
Zm00001d012661_P002	Maize	mitochondrion, plastid	26.63	14.46
Zm00001d040082_P003	Maize	plastid	28.75	14.43
Zm00001d003655_P006	Maize	nucleus, plastid	27.9	13.83
Zm00001d022176_P002	Maize	nucleus	29.6	11.93

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6NU12	InterPro:AAA+_ATPase	ProteinID:AQL01659.1
ncoils:Coil	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	PFAM:PF13401	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF131	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI00084247A4
EnsemblPlantsGene:Zm00001d045147	EnsemblPlants:Zm00001d045147_P015	EnsemblPlants:Zm00001d045147_T015	SEG:seg	:	:

Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4

Coordinates

chr9:-:14236286..14273687

Molecular Weight (calculated)

78648.4 Da

IEP (calculated)

7.889

GRAVY (calculated)

-0.317

Length

706 amino acids

Sequence
(BLAST)

001: MPSPSPAPPP VLPISEHEDE IVAAVDANPV VVVIGETGSG KSTQLSQILH RRGYTRRGAI AVTQPRRVAA VSVSRRVAQE LGVPLGDEVG YAIRFEDRTS
101: ERTCIKYLTD GILLRESLSN PELKQYSVII LDEAHERSLN TDILLGLMKR LIKDRASDLK VLITSATLDG LKVSKFFSGC PVLNIPGTLF PVEKFYSTDR
201: PTNYIESSLR TAIDIHAKEP PGDVLIFMTG KDDIDKMVSK LEERIRNLEE GSCIDALVLP LHGSLPPELQ VRVFAPAPPN CRRFIVATNV AETSLTVDGV
301: VFVIDCGYVK QRQYNPSSGM YSLDVVQISR VQADQRAGRA GRTRPGKCYR LYPISIYQNE FLEATVPEIQ RSSLAGSVLY LKSLNLPDIN ILKFDFLDPP
401: SRESLEDALR QLYLIDAIDE NGQITDVGRV MAELPLEPSL SRTLIEANEL GCLSQALTVA SILSAEITLR SVSKDVVDGK RKRQELPDGS GWGDHIQLLQ
501: IFESWDQTGY DTKWCSHHDL QVRGMKLSKD VRNQLCQIIQ KIAKGSTDVD ARKSRKNDPD YRKLRRALCV GYGNQLAERM LHHNGYHTVG YRTQLVQVHP
601: SSVLEGDEYG KFPMYVIYHE LISTTRPYMR NVCAVEQAWV QPILKKLDKL DINRLSGGSS APGDSELLGD NKQVNSSKND VGVKQSEVDS KIQAARERYL
701: ARKGKK

Best Arabidopsis Sequence Match ( AT1G27900.1 )
(BLAST)

001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.