Factsheet for Zm00001d006459_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36287	Sorghum	nucleus	89.23	93.46
VIT_01s0010g02920.t01	Wine grape	nucleus	57.73	88.8
Os07t0508000-01	Rice	nucleus	83.14	87.42
HORVU2Hr1G047870.2	Barley	nucleus	81.2	86.54
TraesCS2A01G233700.1	Wheat	nucleus	81.2	86.54
TraesCS2B01G249700.1	Wheat	nucleus	80.98	86.3
TraesCS3D01G264900.1	Wheat	plastid	57.36	83.82
Solyc12g089010.1.1	Tomato	nucleus	48.14	80.0
TraesCS2D01G231900.1	Wheat	nucleus	81.06	77.76
CDY23802	Canola	nucleus	29.05	74.48
PGSC0003DMT400039875	Potato	nucleus	50.89	74.21
KRH23170	Soybean	nucleus	68.72	72.78
KRH10165	Soybean	nucleus	68.35	72.33
Bra023387.1-P	Field mustard	nucleus	66.57	71.79
PGSC0003DMT400018531	Potato	nucleus	68.5	71.75
CDX91151	Canola	nucleus	66.57	71.74
CDX85676	Canola	nucleus	66.49	71.71
Solyc10g076910.1.1	Tomato	nucleus	68.42	71.67
AT5G13010.1	Thale cress	nucleus	66.05	70.84
Zm00001d049980_P001	Maize	plasma membrane	23.33	44.99
Zm00001d028923_P002	Maize	nucleus	21.92	40.92
Zm00001d011963_P002	Maize	plasma membrane	21.62	40.36
Zm00001d045147_P015	Maize	nucleus	21.03	40.09
Zm00001d047601_P006	Maize	nucleus	21.47	37.39
Zm00001d015893_P001	Maize	nucleus, plasma membrane	31.57	34.39
Zm00001d045376_P001	Maize	cytosol	7.58	30.91
Zm00001d031581_P002	Maize	nucleus	28.9	29.38
Zm00001d039380_P001	Maize	nucleus	20.13	28.62
Zm00001d032735_P001	Maize	plastid	18.35	23.89
Zm00001d019056_P001	Maize	nucleus	3.42	23.0
Zm00001d017967_P003	Maize	nucleus	19.32	20.33
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	17.9	20.1
Zm00001d040082_P003	Maize	plastid	18.72	17.91
Zm00001d003655_P006	Maize	nucleus, plastid	18.35	17.35
Zm00001d012661_P002	Maize	mitochondrion, plastid	16.27	16.85
Zm00001d022176_P002	Maize	nucleus	18.87	14.5

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:103647704	MapMan:16.4.7.1.6	Gene3D:3.40.50.300	UniProt:A0A1D6EWN6	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000003	GO:GO:0000166	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006412	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009817
GO:GO:0009987	GO:GO:0010051	GO:GO:0010467	GO:GO:0016049	GO:GO:0016246	GO:GO:0016787
GO:GO:0019538	GO:GO:0030154	GO:GO:0031053	GO:GO:0033120	GO:GO:0040007	GO:GO:0040029
GO:GO:0048364	GO:GO:0048767	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	ProteinID:ONM23932.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF91	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0008454FD0	EnsemblPlantsGene:Zm00001d006459	EnsemblPlants:Zm00001d006459_P003
EnsemblPlants:Zm00001d006459_T003	SEG:seg	:	:	:	:

Description

Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7

Coordinates

chr2:-:208858703..208874260

Molecular Weight (calculated)

150513.0 Da

IEP (calculated)

7.267

GRAVY (calculated)

-0.616

Length

1346 amino acids

Sequence
(BLAST)

0001: MAHAGRSGTG AQAQGAPRPS SHQVPSKTSA VAAGGSSSAP TPTSAAANAM PSSSAQAPPS EGPDTLADKK RAAGGGSVFK PPPPMVAVAV GSIDEDEKPG
0101: PTENDATSLS TTIRSNSLRR YRGSGSDDKT SLNESTVTDE DERAPSPNHQ DEPHRQEAHI SRSSQGSRPH GTPRGYGYYD DRGSHDKHGD RERSASIGYS
0201: NSGRRRYHDD RESHTRRAER ERSTSNEYTN KRSRHEHSSR SSRTSARSDW DDGRWEWEDT PRRDYRDNRP GSRRQHPTRS PMLAAASPDA RLVSPWLDGN
0301: TPRLAASPWD NVSPSPAPIR ASGSSKGSSY SHSSGRSHQL TFSSTTSSNI IDADRSPSNP DRNSEITEEM MQEMDYNADR AWYDCEEHTT MFDGDHSMYL
0401: GDDNSYKKRE AEMPKKLTRR DGSLMTLAQS KKMSQMTADN AQWEDRQLLR SGAVKGTEVQ TEFDDEEERK VILLVHDTKP PFLDGRVVFT KQAEPVMPLK
0501: DPTSDMAIIA RKGSSLVREI REKQSMNKSR QRFWELAGSK LGNILGVEKT AEQVDADTAV VGDQGEINFK EEAKFSQHLK DKAEAVSDFA KSKSLSQQRQ
0601: YLPIFTVRDD LLQLCSINNL LRFNNVKYLV CLIFVNPSPC GALVHLCGHQ PISFTTLTIN VVRENQVVVV VGETGSGKTT QLTQYLHEDG YTTTGVVGCT
0701: QPRRVAAMSV AKRVSEEMET DLGDKVGYAI RFEDVTGPNT IIKYMTDGVL LRETLKDADL DKYRVVVMDE AHERSLNTDV LFGILKKVVA RRRDFKLIVT
0801: SATLNADKFS KFFGGVPVFH IPGRTFPVNI MFSKTPCEDY VEAAVKQAMT IHITSGLGDI LIFMTGQEEI EATCYALAER MEQLISSSTK TIPKLEILPI
0901: YSQLPADLQA KIFQKAEEGA RKCIVATNIA ETSLTVDGIF YVIDTGYGKM KVYNPRMGMD ALQVFPVSRA AADQRAGRAG RTGPGTCYRL FTESAYQNEM
1001: LPNPVPEIQR TNLGNVVLLL KSLRVENLLD FDFMDPPPQE NILNSMYQLW VLGALNNVGG LTEIGWKMVE FPLDPTLAKM LLMGEQLECL DEVLTIVSML
1101: SVPSVFFRPK DRAEESDAAR EKFFVPESDH LTLLNVYLQW KSNQYRGDWC NDHFLHVKGL RKAREVRSQL LDILKTLKIP LTSCHMEWDV VRKAICSAYF
1201: HNSARLKGIG EYVNCRNGMP CHLHPSSALY GLGYTPDYVV YHELVLTTKE YMQCVTAVDP QWLAEMGPMF FSVKETDTSL LDHKKRQKEE KTAMEEEMEK
1301: LRRQQAEAAR MEKEKEREKR AKQQQQVAMP GLKKGATYLR PKRMGL

Best Arabidopsis Sequence Match ( AT5G13010.1 )
(BLAST)

0001: MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL

Arabidopsis Description

CUVPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Source:UniProtKB/Swiss-Prot;Acc:F4K2E9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.