CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0508000-01	Rice	nucleus	89.81	90.16
VIT_01s0010g02920.t01	Wine grape	nucleus	60.78	89.26
TraesCS2A01G233700.1	Wheat	nucleus	87.7	89.23
HORVU2Hr1G047870.2	Barley	nucleus	87.7	89.23
Zm00001d006459_P003	Maize	plastid	93.46	89.23
TraesCS2B01G249700.1	Wheat	nucleus	87.55	89.07
TraesCS3D01G264900.1	Wheat	plastid	60.54	84.47
Solyc12g089010.1.1	Tomato	nucleus	50.58	80.25
TraesCS2D01G231900.1	Wheat	nucleus	87.47	80.11
KRH23170	Soybean	nucleus	74.47	75.3
CDY23802	Canola	nucleus	30.51	74.67
KRH10165	Soybean	nucleus	73.85	74.61
PGSC0003DMT400039875	Potato	nucleus	53.54	74.54
PGSC0003DMT400018531	Potato	nucleus	73.46	73.46
Solyc10g076910.1.1	Tomato	nucleus	73.31	73.31
Bra023387.1-P	Field mustard	nucleus	70.82	72.92
CDX85676	Canola	nucleus	70.66	72.76
CDX91151	Canola	nucleus	70.66	72.7
AT5G13010.1	Thale cress	nucleus	70.12	71.79
KXG22666	Sorghum	nucleus	23.27	42.41
OQU86123	Sorghum	nucleus	22.49	41.29
KXG39505	Sorghum	cytosol	22.96	40.86
EER87951	Sorghum	nucleus, plastid	22.41	40.85
KXG30390	Sorghum	nucleus	31.13	38.24
EES02741	Sorghum	nucleus	30.58	37.57
EES15324	Sorghum	nucleus	30.43	36.51
OQU77934	Sorghum	nucleus	29.18	35.18
EER95349	Sorghum	nucleus	33.54	34.7
KXG38358	Sorghum	nucleus	19.22	23.84
KXG37551	Sorghum	nucleus, vacuole	18.83	21.01
KXG30805	Sorghum	nucleus	20.78	20.92
KXG32067	Sorghum	mitochondrion	20.0	20.71
EES01523	Sorghum	nucleus	16.96	18.24
KXG26332	Sorghum	nucleus, plastid	19.38	17.46
OQU90279	Sorghum	nucleus	18.68	15.82

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.6	Gene3D:3.40.50.300	UniProt:A0A1B6QEE4	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF1605	GO:GO:0000003	GO:GO:0000166	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006412	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009817	GO:GO:0009987
GO:GO:0010051	GO:GO:0010467	GO:GO:0016049	GO:GO:0016246	GO:GO:0016787	GO:GO:0019538
GO:GO:0030154	GO:GO:0031053	GO:GO:0033120	GO:GO:0040007	GO:GO:0040029	GO:GO:0048364
GO:GO:0048767	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
EnsemblPlants:KXG36287	ProteinID:KXG36287	ProteinID:KXG36287.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF91
SMART:SM00487	SMART:SM00490	SMART:SM00847	EnsemblPlantsGene:SORBI_3002G313400	SUPFAM:SSF52540	UniParc:UPI0003C7103D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:68676362..68685862

Molecular Weight (calculated)

144446.0 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.671

Length

1285 amino acids

Sequence
(BLAST)

0001: MEGNGNAEVD LDATMTTLGP EDDTSQGLIL TNKQRVMYRP PAGKSVLGLD TLADKKRAAG GGSVFKPPPP NVAVAADSID EDEKPGPTEN DAPSLSTAIR
0101: SNSSRRYRGS GSDDKTSLNE PTVTDDNQRA PTPSHRDETH RQETHISGSS QGSRPHGTPR GSDYYDDRGS RDKYGDRERS ASIGYSSSGR RRYHDDRESH
0201: TRRDERGRST SIEYTNKRSR HEHSSRSSRT PARSDWDDGR WEWEDTPRRD YRDNRPGSRR QHPTRSPMLA AASPDARLVS PWLGGSTPRS AASPWDNVSP
0301: SPAPIRASGS SKGSSYSHSS GRSHQLSFSS TTSSNIFDAD RSPSNPDRNY EITEEMMQEM DYNADRAWYD CEEHTTMFDG DNSMYLGDDN SYKKKEAEMP
0401: KKLTRRDGSL MTLAQSKKLS QMTADNAQWE DRQLLRSGAV KGTEVQTEFD DEEERKVILL VHDTKPPFLD GRVVFTKQAE PVMPLKDPTS DMAIIARKGS
0501: SLVREIREKQ SMNKSRQRFW ELAGSKLGNI LGVEKTAEQV DADTAVVGDQ GEINFKEEAK FSQHLKDKAE AVSDFAKSKS LSQQRQYLPI FTVRDDLLQV
0601: VRENQVVVVV GETGSGKTTQ LTQYLHEDGY TTTGVVGCTQ PRRVAAMSVA KRVSEEMETD LGDKVGYAIR FEDVTGPNTI IKYMTDGVLL RETLKDADLD
0701: KYRVIVMDEA HERSLNTDVL FGILKKVVAR RRDFKLIVTS ATLNADKFSK FFGGVPVFHI PGRTFPVNIM FSKTPCEDYV EAAVKQAMTI HITSGPGDIL
0801: IFMTGQEEIE ATCYALAERM EQLISSSTKT VPKLEILPIY SQLPADLQAK IFQKAEEGAR KCIVATNIAE TSLTVDGIFY VIDTGYGKMK VYNPRMGMDA
0901: LQVFPVSRAA ADQRAGRAGR TGPGTCYRLF TESAYQNEML PNPVPEIQRT NLGNVVLLLK SLRVENLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL
1001: TEIGWKMVEF PLDPTLAKML LMGEQLECLD EVLTIVSMLS VPSVFFRPKD RAEESDAARE KFFVPESDHL TLLNVYLQWK SNQYRGDWCN DHFLHVKGLR
1101: KAREVRSQLL DILKTLKIPL TSCHMEWDVV RKAICSAYFH NSARLKGVGE YVNCRNGMPC HLHPSSALYG LGYTPDYVVY HELVLTTKEY MQCVTAVDPQ
1201: WLAEMGPMFF SVKETDTSLL DHKKRQKEEK TAMEEEMEKL RQEQAEAARM EKEKEREKRA KQQQQVAMPG LKKGATYLRP RKMGL

Best Arabidopsis Sequence Match ( AT5G13010.1 )
(BLAST)

0001: MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL

Arabidopsis Description

CUVPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Source:UniProtKB/Swiss-Prot;Acc:F4K2E9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.