CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032735_P001	Maize	plastid	94.88	95.07
Zm00001d019056_P001	Maize	nucleus	17.95	93.0
HORVU1Hr1G039880.1	Barley	nucleus	80.6	88.36
Os10t0471350-01	Rice	nucleus	84.07	87.27
TraesCS1D01G148100.2	Wheat	nucleus	85.42	86.01
TraesCS1A01G151100.1	Wheat	nucleus	85.42	86.01
GSMUA_Achr8P12550_001	Banana	cytosol	37.74	85.93
TraesCS1B01G168700.3	Wheat	nucleus	85.04	85.45
PGSC0003DMT400055058	Potato	nucleus	63.03	76.46
KRH72171	Soybean	nucleus	64.29	74.0
Solyc01g006970.2.1	Tomato	nucleus	72.88	73.23
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	72.01	72.78
Bra023043.1-P	Field mustard	nucleus	69.4	72.26
KRH32860	Soybean	mitochondrion, nucleus, plastid	71.81	72.23
CDX79642	Canola	nucleus, vacuole	70.27	70.34
AT2G35920.3	Thale cress	plastid	69.69	70.3
CDX84588	Canola	plastid, vacuole	70.08	70.14
GSMUA_Achr8P12540_001	Banana	nucleus	34.75	65.22
KXG37551	Sorghum	nucleus, vacuole	43.63	39.24
KXG32067	Sorghum	mitochondrion	44.59	37.23
KXG39505	Sorghum	cytosol	23.65	33.93
OQU86123	Sorghum	nucleus	21.33	31.57
EER87951	Sorghum	nucleus, plastid	21.14	31.06
KXG22666	Sorghum	nucleus	20.46	30.07
EES01523	Sorghum	nucleus	32.92	28.54
KXG26332	Sorghum	nucleus, plastid	35.23	25.6
KXG30390	Sorghum	nucleus	25.1	24.86
EES02741	Sorghum	nucleus	24.81	24.57
EES15324	Sorghum	nucleus	25.1	24.28
OQU77934	Sorghum	nucleus	24.61	23.92
EER95349	Sorghum	nucleus	25.97	21.66
KXG36287	Sorghum	nucleus	23.84	19.22
KXG30805	Sorghum	nucleus	20.85	16.93
OQU90279	Sorghum	nucleus	20.75	14.17

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6QKB4	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:KXG38358	ProteinID:KXG38358	ProteinID:KXG38358.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF191	SMART:SM00487	SMART:SM00490
SMART:SM00847	EnsemblPlantsGene:SORBI_3001G222500	SUPFAM:SSF52540	UniParc:UPI00081ADC28	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:21212638..21229578

Molecular Weight (calculated)

115345.0 Da

IEP (calculated)

9.000

GRAVY (calculated)

-0.268

Length

1036 amino acids

Sequence
(BLAST)

0001: MLFHSSACRG SRLLSTRSSS GGSSQFPLSR FASSPLKTLG ALRTLVVMSY RGGRGGGGPN SHRGRGRGGG GGRGGRGGGG GRGEQRWWDP EWRAERLRQM
0101: HGEVEKVDEN EWWNKIGQLR EGSQQELVVK RNFGRDGQNI LANMAQRQGL YFNAYNRGKT LVFSKVPLPD YRADLDDRHG STQKEIKMSN QTEARVENLL
0201: SRSKWNTNNS ASTSTVSMRQ FLPSTSSSVV EPAAPIGKEK LSSQLRDLQN SRKTTASARS MQSFREKLPA FSMREEFLKA VAANQVLVIS GETGCGKTTQ
0301: LPQFILEEEI NSLRGSDCSI ICTQPRRISA ISVAARVAAE RGEELGEAVG YQIRLESKRS AQTRLLFCTT GVLLRRLVQE PDLIGVSHLL VDEIHERGMN
0401: EDFLIIILRD LLPRRPDLRL VLMSATINAE LFSKYFGDAP VMHIPGFTFP VAELFLEDVL EKTRYRINSE CDNVAGSSRR KRFSSVKSDP LTDVFEDIDI
0501: NKEYGNYSIT TRQSLESWSA ADLDLSLVES TIEYICRYEA EGAILVFLTG WDEISKLLDK IKGNNFLGSP NRFLVLPLHG SMPTVNQREI FDRPPANMRK
0601: IVLATNIAES SITIDDVVYV IDCGKAKETS YDALNKLACL LPSWISKASA HQRRGRAGRV QPGFCYRLYP KIIHDAMPQF QLPEILRTPL QELCLTIKSL
0701: QLGAVSSFLA KSLQPPDPLS VKNAIELLKT IGALDDTEEL TSLGRHLCTL PVDPNIGKML LMGSVFQCLD PVLTIAAALA YRNPFVLPID RKEEADAVKR
0801: SFAGDSCSDH VALLKAFVAW KEAKRSGRER TFCWENFLSP MTLKMMDDMR NQFFDILSDI GFVSKTAGVK AYNHYGNDLE MVCAVLCAGL YPNVVQCKRR
0901: GKRTVFYTKD VGKVDIHPSS VNAFVNQFPL PFLVYSEKVK TASIYVRDST NISDYALLLF GGSLSPSKTG EGIEMLGGYL HFSASKRTIE LIQKLRGELD
1001: KLLQKKIEEP GLDIFSQGKG VVEAAVELLH SQTFFH

Best Arabidopsis Sequence Match ( AT2G35920.1 )
(BLAST)

001: MPPHGPNSQG GRRGGGHSSG RRGGRGGGGR GGGGGGRGEQ RWWDPVWRAE RLRQQQAEME VLDENEWWNK IEQWKTGGEQ EMLIKRNFSR GDQQTLSDMA
101: LQMGLYFHAY NKGKALVVSK VPLPDYRADL DERHGSTQKE IKMSTETERK LGSLLKTTQE SGSSGASASA FNDQQDRTST LGLKRPDSAS KLPDSLEKEK
201: FSFALKERQE KLKATESVKA LKAFREKLPA FKMKEEFLNS VSQNQVLVVS GETGCGKTTQ LPQFILEEEI SSLRGADCNI ICTQPRRISA ISVASRISAE
301: RGESIGESVG YQIRLESKRS DQTRLLFCTT GVLLRRLIED PNLTNVSHLL VDEIHERGMN EDFLLIILRD LLPRRPDLRL ILMSATINAD MFSTYFGNSP
401: TMHIPGFTFP VAELFLEDVL EKSRYNIKSS DSGNYQGSSR GRRRESESKK DDLTTLFEDI DINSHYKSYS SATRNSLEAW SGAQIDVDLV EATIEHICRL
501: EGGGAILVFL TGWDEISKLL EKINMNNFLG DSSKFLVLPL HGSMPTVNQR EIFDRPPPNK RKIVLATNIA ESSITIDDVV YVVDCGKAKE TSYDALNKVA
601: CLLPSWISKA SAHQRRGRAG RVQAGVCYRL YPKVIYDAFP QYQLPEIIRT PLQELCLHIK SLQVGSIGSF LAKALQPPDA LAVENAIELL KTIGALNDVE
701: ELTPLGRHLC TLPVDPNIGK MLLIGAIFQC VNPALTIAAA LAYRSPFVLP LNRKEEADEA KRYFAGDSCS DHIALLKAYE GYRDAKRGGN EKDFCWQNFL
801: SPVTLRMMED MRNQFLDLLS DIGFVDKSKP NAYNQYSYDM EMISAVLCAG LYPNVVQCKR RGKRTAFYTK ELGKVDIHPG SVNARVNLFS LPYLVYSEKV
901: KTTSVYIRDS TNISDYALLM FGGNLIPSKT GEGIEMLGGY LHFSASKNIL ELIQRLRGEV DKLLNKKIED PSLDITVEGK GVVSAVVELL RSQKH

Arabidopsis Description

RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.