Factsheet for GSMUA_Achr8P12550_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045376_P001	Maize	cytosol	35.38	48.79
PGSC0003DMT400055058	Potato	nucleus	85.49	45.55
HORVU1Hr1G039880.1	Barley	nucleus	87.69	42.22
KRH72171	Soybean	nucleus	81.54	41.22
Os10t0471350-01	Rice	nucleus	87.47	39.88
TraesCS1D01G148100.2	Wheat	nucleus	88.13	38.97
TraesCS1A01G151100.1	Wheat	nucleus	88.13	38.97
TraesCS1B01G168700.3	Wheat	nucleus	87.69	38.7
Zm00001d032735_P001	Maize	plastid	86.59	38.1
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	85.71	38.05
Solyc01g006970.2.1	Tomato	nucleus	85.71	37.83
KXG38358	Sorghum	nucleus	85.93	37.74
KRH32860	Soybean	mitochondrion, nucleus, plastid	83.08	36.7
Bra023043.1-P	Field mustard	nucleus	79.78	36.48
CDX79642	Canola	nucleus, vacuole	80.22	35.27
CDX84588	Canola	plastid, vacuole	79.78	35.07
AT2G35920.3	Thale cress	plastid	79.12	35.05
GSMUA_Achr4P07530_001	Banana	mitochondrion	50.11	19.57
GSMUA_Achr3P12710_001	Banana	nucleus	29.67	18.59
GSMUA_Achr3P20920_001	Banana	mitochondrion, nucleus	49.67	18.07
GSMUA_Achr3P24350_001	Banana	endoplasmic reticulum, vacuole	26.15	16.74
GSMUA_Achr5P02110_001	Banana	mitochondrion	36.26	14.65
GSMUA_Achr2P20940_001	Banana	nucleus	20.88	14.16
GSMUA_Achr6P17860_001	Banana	nucleus	41.32	13.21
GSMUA_Achr4P23370_001	Banana	nucleus	20.44	12.4
GSMUA_Achr5P05110_001	Banana	nucleus	26.59	11.91
GSMUA_Achr10P...	Banana	nucleus	24.4	11.38
GSMUA_Achr3P08220_001	Banana	nucleus	22.86	9.67
GSMUA_Achr1P18470_001	Banana	cytosol	7.03	8.99
GSMUA_Achr8P17640_001	Banana	nucleus	23.74	8.77
Zm00001d019056_P001	Maize	nucleus	3.52	8.0
GSMUA_Achr11P...	Banana	nucleus	4.4	5.28
GSMUA_Achr8P12540_001	Banana	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr8G12550_001
EnsemblPlants:GSMUA_Achr8P12550_001	EnsemblPlants:GSMUA_Achr8T12550_001	InterPro:Helicase-assoc_dom	InterPro:Helicase_C	InterPro:IPR001650	UniProt:M0TPV8
InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF191	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0002961DC7	:

Description

Putative Probable ATP-dependent RNA helicase DHX36 [Source:GMGC_GENE;Acc:GSMUA_Achr8G12550_001]

Coordinates

chr8:+:9363367..9369203

Molecular Weight (calculated)

50511.6 Da

IEP (calculated)

7.900

GRAVY (calculated)

-0.070

Length

455 amino acids

Sequence
(BLAST)

001: MPTVNQREIF DRPPSNMRQI VLATNIAESS ITIDDVVYVI DCGKAKETSY DALNKLACLL PSWISKASAH QRRGRAGRVQ PGVCYRLYPK ILHDAMPQYQ
101: LPEILRTPLQ ELCLNIKSLQ LGAIATFLAK ALQPPDPLSV KNAIEILKTI GALDDTEELT ALGRHLCMLP LDPNIGKMLL MGSIFQCLDP ALTIAAALAH
201: RDPFVLPINR KEEADAVKRS FAGDSCSDHI ALLKAFEAWK GAKRSGRERA FCWENFLSPI TLQMMDDMRN QFLDLLSDIG FVNKAKGAKA YNHYGDDMEM
301: ICAVLCAGLY PNVIQCKRRG KRTAFYSKDV GKVDIHPSSV NAGVHLFPLP YMIYSDKVKT SSIYIRDSTN ISDYALLLFG GSLMPSKSGE GIEMLGGYLH
401: FSAPKSTLHL IQRLRGELDK LLQRKIEEPA LDVHSEGIDV VAAAVELLHS QNVYH

Best Arabidopsis Sequence Match ( AT2G35920.2 )
(BLAST)

001: MEVLDENEWW NKIEQWKTGG EQEMLIKRNF SRGDQQTLSD MALQMGLYFH AYNKGKALVV SKVPLPDYRA DLDERHGSTQ KEIKMSTETE RKLGSLLKTT
101: QESGSSGASA SAFNDQQDRT STLGLKRPDS ASKLPDSLEK EKFSFALKER QEKLKATESV KALKAFREKL PAFKMKEEFL NSVSQNQVLV VSGETGCGKT
201: TQLPQFILEE EISSLRGADC NIICTQPRRI SAISVASRIS AERGESIGES VGYQIRLESK RSDQTRLLFC TTGVLLRRLI EDPNLTNVSH LLVDEIHERG
301: MNEDFLLIIL RDLLPRRPDL RLILMSATIN ADMFSTYFGN SPTMHIPGFT FPVAELFLED VLEKSRYNIK SSDSGNYQGS SRGRRRESES KKDDLTTLFE
401: DIDINSHYKS YSSATRNSLE AWSGAQIDVD LVEATIEHIC RLEGGGAILV FLTGWDEISK LLEKINMNNF LGDSSKFLVL PLHGSMPTVN QREIFDRPPP
501: NKRKIVLATN IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY RLYPKVIYDA FPQYQLPEII RTPLQELCLH
601: IKSLQVGSIG SFLAKALQPP DALAVENAIE LLKTIGALND VEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA AALAYRSPFV LPLNRKEEAD
701: EAKRYFAGDS CSDHIALLKA YEGYRDAKRG GNEKDFCWQN FLSPVTLRMM EDMRNQFLDL LSDIGFVDKS KPNAYNQYSY DMEMISAVLC AGLYPNVVQC
801: KRRGKRTAFY TKELGKVDIH PGSVNARVNL FSLPYLVYSE KVKTTSVYIR DSTNISDYAL LMFGGNLIPS KTGEGIEMLG GYLHFSASKN ILELIQRLRG
901: EVDKLLNKKI EDPSLDITVE GKGVVSAVVE LLRSQKH

Arabidopsis Description

RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.