Factsheet for PGSC0003DMT400055058

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P12550_001	Banana	cytosol	45.55	85.49
Zm00001d045376_P001	Maize	cytosol	32.44	83.94
Solyc01g006970.2.1	Tomato	nucleus	97.78	80.99
KRH72171	Soybean	nucleus	79.27	75.22
Zm00001d019056_P001	Maize	nucleus	17.56	75.0
HORVU1Hr1G039880.1	Barley	nucleus	77.17	69.74
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	83.49	69.56
KRH32860	Soybean	mitochondrion, nucleus, plastid	79.74	66.12
Os10t0471350-01	Rice	nucleus	76.7	65.63
Bra023043.1-P	Field mustard	nucleus	76.46	65.63
TraesCS1A01G151100.1	Wheat	nucleus	77.52	64.33
TraesCS1D01G148100.2	Wheat	nucleus	77.52	64.33
TraesCS1B01G168700.3	Wheat	nucleus	77.28	64.02
AT2G35920.3	Thale cress	plastid	76.58	63.68
Zm00001d032735_P001	Maize	plastid	76.58	63.25
CDX79642	Canola	nucleus, vacuole	76.58	63.19
CDX84588	Canola	plastid, vacuole	76.58	63.19
KXG38358	Sorghum	nucleus	76.46	63.03
GSMUA_Achr8P12540_001	Banana	nucleus	28.22	43.66
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	16.28	39.83
PGSC0003DMT400055091	Potato	mitochondrion	50.23	36.86
PGSC0003DMT400023284	Potato	nucleus	27.99	33.06
PGSC0003DMT400084916	Potato	nucleus	29.98	31.96
PGSC0003DMT400009842	Potato	mitochondrion	13.58	30.77
PGSC0003DMT400046188	Potato	nucleus	24.47	30.29
PGSC0003DMT400005723	Potato	nucleus	26.11	27.13
PGSC0003DMT400039875	Potato	nucleus	27.63	25.57
PGSC0003DMT400063370	Potato	nucleus	27.28	22.19
PGSC0003DMT400056692	Potato	nucleus	28.22	21.12
PGSC0003DMT400018531	Potato	nucleus	27.87	18.52
PGSC0003DMT400000297	Potato	nucleus	24.71	15.79
PGSC0003DMT400041805	Potato	nucleus	23.54	12.39
PGSC0003DMT400060759	Potato	nucleus	22.95	11.34
PGSC0003DMT400041647	Potato	cytosol	0.35	0.82
PGSC0003DMT400063366	Potato	plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	UniProt:M1BXA3	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	EnsemblPlantsGene:PGSC0003DMG400021363	PGSC:PGSC0003DMG400021363	EnsemblPlants:PGSC0003DMT400055058	ScanProsite:PS00690	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF191	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI000296B787	SEG:seg	:	:	:

Description

Helicase domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021363]

Coordinates

chr1:+:2847937..2859298

Molecular Weight (calculated)

95350.0 Da

IEP (calculated)

6.955

GRAVY (calculated)

-0.191

Length

854 amino acids

Sequence
(BLAST)

001: MSTEIEERVG NLLSSSQDTV SAGTSSSTSG NSAKLSSKAV ETAKPKLTIE DDTATKTLNV ELKQKQEKTR ESEKVKAMIS FREKLPAFKV KSEFMEAVAN
101: NQVLVVSGET GCGKTTQLPQ FILEEEISSL RGVDCNIICT QPRRISAISV AARICSERGE SLGDTVGYQI RLEAKRSAQT RLLFCTTGVL LRRLVQDPDL
201: TGVSHLLVDE IHERGMNEDF LLIILRDLLP RRPDLRLILM SATINAELFS QYFRDAPTIH IPGLTYPVEE LFLEDVLEKT RYLIKSEADN FQGNSRRRMR
301: QQDSKRDPLT DLFEDVDISS HYKGYSMTTR QSLEAWSGSQ LDLGLVEASI EYICRCEGEG AILVFLAGWD EISKLLDKIK ANNFLGDTRK FLVLPLHGSM
401: PTVNQREIFD RPPANTRKIV LATNIAESSI TIDDVVYVID CGKAKETSYD ALNKLACLLP SWISKASAHQ RRGRAGRVQP GVCYRLYPKL IHDAMAQYQL
501: PEILRTPLQE LCLHIKSLQF GAIESFLAKA LQPPDALSVH NAIELLKTIG ALDDTEELTP LGRHLCTLPL DPNIGKMLLM GSIFQCLNPA LTIAAALAHR
601: DPFVLPLNRK EEADAAKRSF AGDSCSDHIA LLKAFEGWKD AKRYGKERTF CWENFLSPVT LQMMEDMRNQ FVDLLSDIGF VDKSRGAKAY NEYSNDLEMV
701: CAILCAGLYP NVVQCKRRGK RTAFYTKEVG KVDIHPASVN ASVHLFPLPY LVYSEKVKTS SIYIRDSTNI SDYSLLMFGG NLTPSKSGDG IEMLGGYLHF
801: SASKSVLDLI KKLRVELDKI LKRKIEEPHF DVSVEGKGVV AAVVELLHSQ DIRY

Best Arabidopsis Sequence Match ( AT2G35920.2 )
(BLAST)

001: MEVLDENEWW NKIEQWKTGG EQEMLIKRNF SRGDQQTLSD MALQMGLYFH AYNKGKALVV SKVPLPDYRA DLDERHGSTQ KEIKMSTETE RKLGSLLKTT
101: QESGSSGASA SAFNDQQDRT STLGLKRPDS ASKLPDSLEK EKFSFALKER QEKLKATESV KALKAFREKL PAFKMKEEFL NSVSQNQVLV VSGETGCGKT
201: TQLPQFILEE EISSLRGADC NIICTQPRRI SAISVASRIS AERGESIGES VGYQIRLESK RSDQTRLLFC TTGVLLRRLI EDPNLTNVSH LLVDEIHERG
301: MNEDFLLIIL RDLLPRRPDL RLILMSATIN ADMFSTYFGN SPTMHIPGFT FPVAELFLED VLEKSRYNIK SSDSGNYQGS SRGRRRESES KKDDLTTLFE
401: DIDINSHYKS YSSATRNSLE AWSGAQIDVD LVEATIEHIC RLEGGGAILV FLTGWDEISK LLEKINMNNF LGDSSKFLVL PLHGSMPTVN QREIFDRPPP
501: NKRKIVLATN IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY RLYPKVIYDA FPQYQLPEII RTPLQELCLH
601: IKSLQVGSIG SFLAKALQPP DALAVENAIE LLKTIGALND VEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA AALAYRSPFV LPLNRKEEAD
701: EAKRYFAGDS CSDHIALLKA YEGYRDAKRG GNEKDFCWQN FLSPVTLRMM EDMRNQFLDL LSDIGFVDKS KPNAYNQYSY DMEMISAVLC AGLYPNVVQC
801: KRRGKRTAFY TKELGKVDIH PGSVNARVNL FSLPYLVYSE KVKTTSVYIR DSTNISDYAL LMFGGNLIPS KTGEGIEMLG GYLHFSASKN ILELIQRLRG
901: EVDKLLNKKI EDPSLDITVE GKGVVSAVVE LLRSQKH

Arabidopsis Description

RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.