Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400084916 | Potato | nucleus | 63.45 | 90.39 |
| Solyc07g039550.2.1 | Tomato | nucleus | 93.43 | 89.58 |
| Os02t0301500-01 | Rice | nucleus | 40.84 | 85.35 |
| VIT_08s0056g00470.t01 | Wine grape | nucleus | 82.73 | 80.34 |
| GSMUA_Achr10P... | Banana | nucleus | 67.31 | 78.77 |
| KRH05918 | Soybean | nucleus | 82.12 | 78.28 |
| KRH17401 | Soybean | nucleus | 82.47 | 78.22 |
| CDX83624 | Canola | nucleus | 76.42 | 78.21 |
| CDY23338 | Canola | cytosol | 28.75 | 77.73 |
| CDY13640 | Canola | nucleus | 76.6 | 77.69 |
| AT3G26560.1 | Thale cress | nucleus | 79.23 | 77.4 |
| KRG97372 | Soybean | nucleus | 65.12 | 76.84 |
| Bra025211.1-P | Field mustard | nucleus | 78.0 | 76.0 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 79.67 | 73.66 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 79.58 | 73.58 |
| EER95349 | Sorghum | nucleus | 79.49 | 73.03 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 79.49 | 73.03 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 78.97 | 72.9 |
| Bra040091.1-P | Field mustard | nucleus | 49.87 | 71.93 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 79.49 | 70.36 |
| Os06t0343100-01 | Rice | nucleus | 65.73 | 69.19 |
| EES15324 | Sorghum | nucleus | 64.42 | 68.63 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 63.45 | 67.29 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 63.54 | 67.01 |
| PGSC0003DMT400038620 | Potato | cytosol, nucleus, plastid | 16.91 | 55.3 |
| Zm00001d031581_P002 | Maize | nucleus | 63.8 | 54.98 |
| PGSC0003DMT400023284 | Potato | nucleus | 30.32 | 47.86 |
| PGSC0003DMT400005723 | Potato | nucleus | 32.87 | 45.62 |
| PGSC0003DMT400046188 | Potato | nucleus | 27.52 | 45.51 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 13.94 | 42.18 |
| PGSC0003DMT400063370 | Potato | nucleus | 37.6 | 40.86 |
| PGSC0003DMT400039875 | Potato | nucleus | 32.52 | 40.2 |
| PGSC0003DMT400018531 | Potato | nucleus | 36.2 | 32.14 |
| PGSC0003DMT400055058 | Potato | nucleus | 21.12 | 28.22 |
| CDY51663 | Canola | nucleus | 1.49 | 26.98 |
| CDX91491 | Canola | nucleus | 1.49 | 26.98 |
| PGSC0003DMT400055091 | Potato | mitochondrion | 22.09 | 21.65 |
| PGSC0003DMT400000297 | Potato | nucleus | 22.87 | 19.54 |
| PGSC0003DMT400063366 | Potato | plastid | 1.93 | 15.38 |
| PGSC0003DMT400041805 | Potato | nucleus | 20.86 | 14.67 |
| PGSC0003DMT400060759 | Potato | nucleus | 21.82 | 14.4 |
| PGSC0003DMT400041647 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:102590563 | Gene3D:2.40.50.140 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR003029 | InterPro:IPR014001 | UniProt:M1BZT2 | InterPro:NA-bd_OB-fold |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00575 | PFAM:PF04408 | PFAM:PF07717 |
| EnsemblPlantsGene:PGSC0003DMG400022045 | PGSC:PGSC0003DMG400022045 | EnsemblPlants:PGSC0003DMT400056692 | ScanProsite:PS00690 | PFscan:PS50126 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF120 | InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF50249 | SUPFAM:SSF52540 | UniParc:UPI0002963A6E |
| RefSeq:XP_015169028.1 | SEG:seg | : | : | : | : |
Description
ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400022045]
Coordinates
chr7:-:35789080..35793006
Molecular Weight (calculated)
130181.0 Da
IEP (calculated)
5.651
GRAVY (calculated)
-0.582
Length
1141 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGTDTEENEL EKLEYLSLIS KVCSELEAHL GFGDKVLAEF ITELGRNCST VDEFDAKLKE SGAEMPDYFV KTLLTIIHAI LPPKVTSKSD KDFNKDDNDS
0101: EFSALKIRDN RERVKELEKE IELEAKSKRR DVEEEECGSR RERDRDYRRE RCRDRDRGRD RDRDDYDDGR AERMTSERHR DRDRDRDNED DAYAKGRRDE
0201: YEQESDDDRR DMRKSRHHVD EPELYAVYKG RVSRVMDSGC FVQLSDFRGK EGLVHVSQLA TRRVTNAKDL VKRDQEVFVK VISISGQKLS LSMRDVDQNT
0301: GKDLLPLKKS LGDDRLTTNP STMNGEGSKT RIGLSGIRIM EQEDVIPSRR PLKRMSSPEK WEGKQLIAAG VLGVQEHPMF DEEGNGMLYQ EEGAEEELEV
0401: ELNEDEPPFL QGQSRYSVDM SPVKIFKNPE GSLSRAAALQ SALIKERREV REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSSYDMPEWK
0501: KDAYGKALTF GQRSKLSLQE QRQSLPIYKL KKELVQAVLD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTR GKIGCTQPRR VATMSVAKRV AEEFGCRLGE
0601: EVGYAIRFED CTGPETVIKY MTDGMLLREI LIDDNLSQYS VVMLDEAHER TIHTYVLFGL LKQLMKRRPD LRLIITSATL DAEKFSGYFF DCNIFTIPGR
0701: TFPVEILYTK QPESDYLDAA LITVMQIHLT EPEGDILLFL TGQEEIDYAC QCLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFYPAPP GKRKVVVATN
0801: IAEASLTIDG IYYVIDPGFA KQNVYNPKQG LDSLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAFHS EMSPTAIPEI QRINLGNTVL MMKAMGINDL
0901: LSFDFMDPPS PQALISAMEQ LYTLGALDEE GLLTKLGRKM AEFPLDPPLS KMLLASVDLG YSDEILTIIA MIQTGNIFYR PREKQAQADQ KRAKNFQPEG
1001: DHLTLLAVYE AWKAKNFSGP WCFENFVQSR SLKRAHDVRK QLLSIMDKYK LDVVSAGKNF TKIRKAIGAG FFFHVARKDP QEGYRTLVEN RPVYIHPSSA
1101: LFQRQPDWVI YHELVMTTKK YMREVTVAPY FEQAETVHNI I
0101: EFSALKIRDN RERVKELEKE IELEAKSKRR DVEEEECGSR RERDRDYRRE RCRDRDRGRD RDRDDYDDGR AERMTSERHR DRDRDRDNED DAYAKGRRDE
0201: YEQESDDDRR DMRKSRHHVD EPELYAVYKG RVSRVMDSGC FVQLSDFRGK EGLVHVSQLA TRRVTNAKDL VKRDQEVFVK VISISGQKLS LSMRDVDQNT
0301: GKDLLPLKKS LGDDRLTTNP STMNGEGSKT RIGLSGIRIM EQEDVIPSRR PLKRMSSPEK WEGKQLIAAG VLGVQEHPMF DEEGNGMLYQ EEGAEEELEV
0401: ELNEDEPPFL QGQSRYSVDM SPVKIFKNPE GSLSRAAALQ SALIKERREV REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSSYDMPEWK
0501: KDAYGKALTF GQRSKLSLQE QRQSLPIYKL KKELVQAVLD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTR GKIGCTQPRR VATMSVAKRV AEEFGCRLGE
0601: EVGYAIRFED CTGPETVIKY MTDGMLLREI LIDDNLSQYS VVMLDEAHER TIHTYVLFGL LKQLMKRRPD LRLIITSATL DAEKFSGYFF DCNIFTIPGR
0701: TFPVEILYTK QPESDYLDAA LITVMQIHLT EPEGDILLFL TGQEEIDYAC QCLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFYPAPP GKRKVVVATN
0801: IAEASLTIDG IYYVIDPGFA KQNVYNPKQG LDSLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAFHS EMSPTAIPEI QRINLGNTVL MMKAMGINDL
0901: LSFDFMDPPS PQALISAMEQ LYTLGALDEE GLLTKLGRKM AEFPLDPPLS KMLLASVDLG YSDEILTIIA MIQTGNIFYR PREKQAQADQ KRAKNFQPEG
1001: DHLTLLAVYE AWKAKNFSGP WCFENFVQSR SLKRAHDVRK QLLSIMDKYK LDVVSAGKNF TKIRKAIGAG FFFHVARKDP QEGYRTLVEN RPVYIHPSSA
1101: LFQRQPDWVI YHELVMTTKK YMREVTVAPY FEQAETVHNI I
0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.