Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0301500-01 | Rice | nucleus | 43.0 | 97.8 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 97.02 | 97.65 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 96.62 | 97.24 |
| CDY51663 | Canola | nucleus | 4.75 | 93.65 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 96.7 | 93.17 |
| PGSC0003DMT400084916 | Potato | nucleus | 59.42 | 92.13 |
| CDX91491 | Canola | nucleus | 4.67 | 92.06 |
| CDY23338 | Canola | cytosol | 30.03 | 88.39 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 87.92 | 88.35 |
| EER95349 | Sorghum | nucleus | 88.24 | 88.24 |
| GSMUA_Achr10P... | Banana | nucleus | 68.28 | 86.97 |
| VIT_08s0056g00470.t01 | Wine grape | nucleus | 78.42 | 82.89 |
| KRH05918 | Soybean | nucleus | 79.15 | 82.12 |
| KRH17401 | Soybean | nucleus | 79.39 | 81.96 |
| KRG97372 | Soybean | nucleus | 63.45 | 81.49 |
| Solyc07g039550.2.1 | Tomato | nucleus | 77.86 | 81.26 |
| CDX83624 | Canola | nucleus | 72.79 | 81.08 |
| Solyc01g110990.2.1 | Tomato | nucleus | 72.46 | 81.01 |
| CDY13640 | Canola | nucleus | 72.95 | 80.53 |
| AT3G26560.1 | Thale cress | nucleus | 75.68 | 80.48 |
| PGSC0003DMT400056692 | Potato | nucleus | 73.03 | 79.49 |
| Bra025211.1-P | Field mustard | nucleus | 74.15 | 78.65 |
| Bra040091.1-P | Field mustard | nucleus | 48.95 | 76.86 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 29.15 | 50.21 |
| HORVU3Hr1G028550.17 | Barley | cytosol | 25.2 | 44.91 |
| HORVU1Hr1G056370.1 | Barley | nucleus | 35.19 | 41.11 |
| HORVU1Hr1G056400.1 | Barley | nucleus | 35.19 | 41.03 |
| HORVU7Hr1G032080.3 | Barley | plastid | 26.81 | 40.66 |
| HORVU4Hr1G088270.17 | Barley | mitochondrion | 34.54 | 39.72 |
| HORVU2Hr1G047870.2 | Barley | nucleus | 33.98 | 33.41 |
| HORVU1Hr1G039880.1 | Barley | nucleus | 21.58 | 28.36 |
| HORVU5Hr1G094990.5 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 21.5 | 23.22 |
| HORVU3Hr1G002800.8 | Barley | mitochondrion | 21.26 | 21.17 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 21.42 | 20.67 |
| HORVU3Hr1G074660.7 | Barley | plastid | 18.2 | 17.74 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 20.21 | 14.7 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 19.81 | 13.48 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:2.40.50.140 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:HORVU0Hr1G007860 | EnsemblPlants:HORVU0Hr1G007860.1 |
| InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR003029 | InterPro:IPR014001 |
| UniProt:M0VRJ6 | InterPro:NA-bd_OB-fold | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00575 |
| PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS50126 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF120 | InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF50249 | SUPFAM:SSF52540 | UniParc:UPI000294D236 | SEG:seg |
Description
No Description!
Coordinates
chrchrUn:-:45859765..45864877
Molecular Weight (calculated)
140336.0 Da
IEP (calculated)
6.806
GRAVY (calculated)
-0.656
Length
1242 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAPASAEGPG DDGLRKLEYL SLVSKVCSEL ETHIGVGDKV LAEFITELGR DAPSVADFDA KLKANGADLP DYFIRTLLTI IHAILPPPSH IPSSAASQSN
0101: SKYRALSRPD DADRARELRL ELERDANAPA ATTPAPSTDR SRDDRGRDRD HDRRRDERGR DRDHDRSRDR DSGRGDRSQN RDRAHDDRGQ DRNHDRGRER
0201: DHGLDRDRDR GTAYGRDRDR EGDRDGNGRK DLDRLKQRDR YVDRDTGNAH GRTRRYLDEE EGQQERAGGR KKENTLTNSS GEPELYQVYR GRVTRVMDTG
0301: CFVKLEDVRG GSEGLVHVSQ MASRRVANAK EVVKRDQEVF VKVVSVKGDK LSLSLRDVDQ DTGKDLLPMQ RGVEDAPRTN PSVGSGGTAG SGRRLGLSGI
0401: VITEEDEVAP ISRRPLKRMS SPERWEAKQL IASGVLDVRN YPQFDEDGDG MLYQEEGAEE ELEIELNEDE PEFLQGQSRF SIDMSPVKIF KNPEGSLSRA
0501: AALQTALIKE RREVREQEQR AMLDSIPKDL NRPWEDPMPD TGERHLAQEL RGVGLSAYDM PEWKKEAYGK ALTFGQRSKL SIQDQRQTLP IYKLKKELIQ
0601: AVHDNQVLVV IGETGSGKTT QVTQYLAEAG YTSRGKIGCT QPRRVAAMSV AKRVAEEFGC RLGEEVGYAI RFEDCTGPET VIKYMTDGML LREILVDENL
0701: SQYSVVMLDE AHERTIHTDV LFGLLKQLVK RRPDMRLIVT SATLDAEKFS GYFFNCNIFT IPGRTFPVEI LYTKQPESDY LDAALITVLQ IHLTEPEGDI
0801: LVFLTGQEEI DHACQCLYER MKGLGKDVPE LIILPVYSAL PSEMQSKIFE PAPPGKRKVV VATNIAEASL TIDGIYYVID PGFAKINVYN SKQGLDSLVI
0901: TPISQASAKQ RAGRAGRTGP GKCYRLYTES AYRNEMSPTT IPEIQRINLG STVLNMKAMG INDLLSFDFM DPPAPQALIS AMEQLYSLGA LDEEGLLTKL
1001: GRKMAEFPLD PPLSKMLLAS VDLGCSDEIL TIIAMIQTGN IFYRPREKQA QADQKRAKFF QPEGDHLTLL AVYEAWKAKN FSGPWCFENF VQSRSLRRAQ
1101: DVRKQLLTIM DRYKLDVVAA GKNFTKVRKA ITAGFFFHAA RKDPQEGYRT LVENQPVYIH PSSALFQRQP DWVIYHELVM TTKEYMREVT VVDPKWLVEL
1201: APRFYKGADP TKMSKRKRQE RIEPLYDRYH EPNSWRLSKR RA
0101: SKYRALSRPD DADRARELRL ELERDANAPA ATTPAPSTDR SRDDRGRDRD HDRRRDERGR DRDHDRSRDR DSGRGDRSQN RDRAHDDRGQ DRNHDRGRER
0201: DHGLDRDRDR GTAYGRDRDR EGDRDGNGRK DLDRLKQRDR YVDRDTGNAH GRTRRYLDEE EGQQERAGGR KKENTLTNSS GEPELYQVYR GRVTRVMDTG
0301: CFVKLEDVRG GSEGLVHVSQ MASRRVANAK EVVKRDQEVF VKVVSVKGDK LSLSLRDVDQ DTGKDLLPMQ RGVEDAPRTN PSVGSGGTAG SGRRLGLSGI
0401: VITEEDEVAP ISRRPLKRMS SPERWEAKQL IASGVLDVRN YPQFDEDGDG MLYQEEGAEE ELEIELNEDE PEFLQGQSRF SIDMSPVKIF KNPEGSLSRA
0501: AALQTALIKE RREVREQEQR AMLDSIPKDL NRPWEDPMPD TGERHLAQEL RGVGLSAYDM PEWKKEAYGK ALTFGQRSKL SIQDQRQTLP IYKLKKELIQ
0601: AVHDNQVLVV IGETGSGKTT QVTQYLAEAG YTSRGKIGCT QPRRVAAMSV AKRVAEEFGC RLGEEVGYAI RFEDCTGPET VIKYMTDGML LREILVDENL
0701: SQYSVVMLDE AHERTIHTDV LFGLLKQLVK RRPDMRLIVT SATLDAEKFS GYFFNCNIFT IPGRTFPVEI LYTKQPESDY LDAALITVLQ IHLTEPEGDI
0801: LVFLTGQEEI DHACQCLYER MKGLGKDVPE LIILPVYSAL PSEMQSKIFE PAPPGKRKVV VATNIAEASL TIDGIYYVID PGFAKINVYN SKQGLDSLVI
0901: TPISQASAKQ RAGRAGRTGP GKCYRLYTES AYRNEMSPTT IPEIQRINLG STVLNMKAMG INDLLSFDFM DPPAPQALIS AMEQLYSLGA LDEEGLLTKL
1001: GRKMAEFPLD PPLSKMLLAS VDLGCSDEIL TIIAMIQTGN IFYRPREKQA QADQKRAKFF QPEGDHLTLL AVYEAWKAKN FSGPWCFENF VQSRSLRRAQ
1101: DVRKQLLTIM DRYKLDVVAA GKNFTKVRKA ITAGFFFHAA RKDPQEGYRT LVENQPVYIH PSSALFQRQP DWVIYHELVM TTKEYMREVT VVDPKWLVEL
1201: APRFYKGADP TKMSKRKRQE RIEPLYDRYH EPNSWRLSKR RA
0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.