Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G148100.1 | Wheat | nucleus | 94.69 | 94.15 |
| TraesCS3B01G165500.1 | Wheat | nucleus | 94.4 | 93.87 |
| TraesCS3A01G131800.1 | Wheat | nucleus | 93.69 | 93.15 |
| OQU86123 | Sorghum | nucleus | 87.09 | 86.71 |
| Os01t0212100-01 | Rice | nucleus | 86.94 | 86.57 |
| VIT_10s0003g00810.t01 | Wine grape | nucleus | 72.74 | 73.05 |
| Solyc09g097820.2.1 | Tomato | nucleus | 70.44 | 70.85 |
| PGSC0003DMT400046188 | Potato | nucleus | 70.01 | 70.72 |
| Bra013313.1-P | Field mustard | nucleus | 70.16 | 70.16 |
| AT4G18465.1 | Thale cress | nucleus | 69.87 | 70.07 |
| CDX78859 | Canola | nucleus | 70.01 | 69.91 |
| CDX99466 | Canola | nucleus | 70.16 | 69.86 |
| KRH21325 | Soybean | nucleus | 66.57 | 69.67 |
| GSMUA_Achr11P... | Banana | nucleus | 37.59 | 69.13 |
| Zm00001d039380_P001 | Maize | nucleus | 72.45 | 53.33 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 41.32 | 39.94 |
| HORVU7Hr1G032080.3 | Barley | plastid | 38.45 | 32.72 |
| HORVU1Hr1G056370.1 | Barley | nucleus | 42.9 | 28.13 |
| HORVU1Hr1G056400.1 | Barley | nucleus | 42.9 | 28.08 |
| HORVU4Hr1G088270.17 | Barley | mitochondrion | 40.75 | 26.3 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 44.91 | 25.2 |
| HORVU1Hr1G039880.1 | Barley | nucleus | 29.7 | 21.9 |
| HORVU2Hr1G047870.2 | Barley | nucleus | 38.31 | 21.14 |
| HORVU5Hr1G094990.5 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 28.98 | 17.57 |
| HORVU3Hr1G002800.8 | Barley | mitochondrion | 30.7 | 17.16 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 30.27 | 16.39 |
| HORVU3Hr1G074660.7 | Barley | plastid | 24.53 | 13.42 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 28.98 | 11.83 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 28.84 | 11.01 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A287KJQ8 | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0009506 |
| GO:GO:0016787 | EnsemblPlantsGene:HORVU3Hr1G028550 | EnsemblPlants:HORVU3Hr1G028550.17 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 |
| ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF136 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI000B47A106 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr3H:-:127835384..127877264
Molecular Weight (calculated)
77498.7 Da
IEP (calculated)
7.351
GRAVY (calculated)
-0.126
Length
697 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKFWRPGSE KPSASLVDDE EGGVLFLPTN TSASSSSSGX GGGGIRPKKW CVSSVLYLDS NKHLTFTGLL TGRDKGLCLI LPPYLKEAGW AEGGRLIGCT
101: QPRRLAVQTV ASRVAEEVGV KLGEEVGYTI RFEDETNPGM TMIKFLTDGV LIREMMEDPL LSKYSVIMID EAHERSISTD ILLGLLKKIQ RLRPELRLII
201: SSATIEARSM STFFSNRRKN SLLKPADGLP NPEPAILSVE GRGYTVETHY LEEPVSDYLQ AAVNTVLIIH EKEPPGDILV FLTGQDDIDA ALKLLNDEIQ
301: HLGKHYFDLV ILPLYSGLPR GDQDLIFAPT SKGKRKVVIS TNIAETSLTL EGVVYVVDSG FSKQKCYNPI SDLESLVVAP ISKASARQRA GRAGRVRPGK
401: CFRLYTEEYY LNEMQSDGIP EMQRSNLVSC IIQLKALGID NILGFDWPAS PSPEAMIRAL EILFSLGILD EDAKLTVPIG FQVAEMPLDP MISKMILSAN
501: DFGCSDEILT IAAFLSVQSV WVSMRGVKKE FDEAKLRFAA AEGDHVTFLN IYKGFHQSGK SSQWCYKNFL NHQALKKVIE IRAQLVRVMK RFGIQLKSCD
601: RDMQAVRKAI IAGSFANSCH LEEYGQNGMY KTIRTSQEVY IHPSSVLFRV NPKWVVYQSL VSTDKHYMRN VIAIEPSWLT EAAPHFYQFR TPNPAPH
101: QPRRLAVQTV ASRVAEEVGV KLGEEVGYTI RFEDETNPGM TMIKFLTDGV LIREMMEDPL LSKYSVIMID EAHERSISTD ILLGLLKKIQ RLRPELRLII
201: SSATIEARSM STFFSNRRKN SLLKPADGLP NPEPAILSVE GRGYTVETHY LEEPVSDYLQ AAVNTVLIIH EKEPPGDILV FLTGQDDIDA ALKLLNDEIQ
301: HLGKHYFDLV ILPLYSGLPR GDQDLIFAPT SKGKRKVVIS TNIAETSLTL EGVVYVVDSG FSKQKCYNPI SDLESLVVAP ISKASARQRA GRAGRVRPGK
401: CFRLYTEEYY LNEMQSDGIP EMQRSNLVSC IIQLKALGID NILGFDWPAS PSPEAMIRAL EILFSLGILD EDAKLTVPIG FQVAEMPLDP MISKMILSAN
501: DFGCSDEILT IAAFLSVQSV WVSMRGVKKE FDEAKLRFAA AEGDHVTFLN IYKGFHQSGK SSQWCYKNFL NHQALKKVIE IRAQLVRVMK RFGIQLKSCD
601: RDMQAVRKAI IAGSFANSCH LEEYGQNGMY KTIRTSQEVY IHPSSVLFRV NPKWVVYQSL VSTDKHYMRN VIAIEPSWLT EAAPHFYQFR TPNPAPH
001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.