Factsheet for Zm00001d039380_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86123	Sorghum	nucleus	61.67	83.43
Os01t0212100-01	Rice	nucleus	57.66	78.0
TraesCS3D01G148100.1	Wheat	nucleus	57.44	77.6
TraesCS3B01G165500.1	Wheat	nucleus	57.44	77.6
TraesCS3A01G131800.1	Wheat	nucleus	57.23	77.32
HORVU3Hr1G028550.17	Barley	cytosol	53.33	72.45
GSMUA_Achr11P...	Banana	nucleus	28.72	71.77
VIT_10s0003g00810.t01	Wine grape	nucleus	48.47	66.14
Bra013313.1-P	Field mustard	nucleus	47.73	64.85
CDX78859	Canola	nucleus	47.52	64.47
AT4G18465.1	Thale cress	nucleus	47.31	64.46
CDX99466	Canola	nucleus	47.62	64.43
PGSC0003DMT400046188	Potato	nucleus	46.67	64.06
Solyc09g097820.2.1	Tomato	nucleus	46.67	63.78
KRH21325	Soybean	nucleus	43.61	62.01
Zm00001d028923_P002	Maize	nucleus	28.41	37.31
Zm00001d049980_P001	Maize	plasma membrane	25.66	34.81
Zm00001d047601_P006	Maize	nucleus	28.19	34.54
Zm00001d011963_P002	Maize	plasma membrane	26.19	34.4
Zm00001d045147_P015	Maize	nucleus	23.86	32.01
Zm00001d045376_P001	Maize	cytosol	9.19	26.36
Zm00001d015893_P001	Maize	nucleus, plasma membrane	32.21	24.68
Zm00001d031581_P002	Maize	nucleus	29.25	20.92
Zm00001d006459_P003	Maize	plastid	28.62	20.13
Zm00001d032735_P001	Maize	plastid	20.38	18.67
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	20.7	16.35
Zm00001d017967_P003	Maize	nucleus	20.7	15.32
Zm00001d040082_P003	Maize	plastid	21.44	14.43
Zm00001d019056_P001	Maize	nucleus	2.96	14.0
Zm00001d003655_P006	Maize	nucleus, plastid	20.27	13.48
Zm00001d012661_P002	Maize	mitochondrion, plastid	18.27	13.31
Zm00001d022176_P002	Maize	nucleus	21.12	11.42

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A1D6MG09	InterPro:DNA/RNA_helicase_DEAH_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0009506
GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR032675	InterPro:LRR_dom_sf	ProteinID:ONM28500.1	ProteinID:ONM28501.1	ProteinID:ONM28502.1	ProteinID:ONM28506.1
ProteinID:ONM28512.1	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	ScanProsite:PS00690	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF136	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52047	SUPFAM:SSF52540	UniParc:UPI0008454E51	EnsemblPlantsGene:Zm00001d039380	EnsemblPlants:Zm00001d039380_P001	EnsemblPlants:Zm00001d039380_T001
SEG:seg	:	:	:	:	:

Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9

Coordinates

chr3:-:2938833..2959818

Molecular Weight (calculated)

104885.0 Da

IEP (calculated)

6.172

GRAVY (calculated)

0.020

Length

947 amino acids

Sequence
(BLAST)

001: MEKLEESETK VGFLWYEHIY KLDKGPETQM HTLAKNIAGT SLVYTKYFKM IEEGTYYILE ICSCTSHVIV QIRKGKLSFE QLNNIKYRAL YGITITKLTQ
101: GVTADEEELM DEGIRSLIPF MSWSIQKENP LLRLTVENCE LSSIGVIILL DCLTNAKQLL DVLSIADNHL GSPVAAALAR FLGSHVRALN ATDIGLGTVG
201: FQILEETLPT EVALSHINIS VSLGSAPAIA DSLAIRVGGQ AMSRFWKPGS EKPSTLLVDD EEGGVVFLPS SSSVSSSGFG YASLERQRQR LPVYKYRKAI
301: LYLVERHATT IVVGETGSGK STQIPQYLKE AGWADGGRLI GCTQPRRLAV QYFLLLYADV SPSHLLLIIA FSTHLTIEQM VASRVAEEVG VKLGEEVGYT
401: IRFEDQTNPG MTMIKFLTDG VLIREMMEDP LLTKYSVIMV DEAHERSIST DMLLGLLKKP CQVKMRIAYL TSHTIEIQKD FLNNCHVTNT QSVVAMIHAL
501: VINLSILPYW RKNSLLGSSD NLPSPEPAVL SVEGKGYTVE IHYVEEPVSD YLQATVNTVL LIHEKARFFM QEPPGDILVF LTGQDDIEAA VKLLNEEIQH
601: LGRHYLVGQR EAPDLSLVSD QLPPAIMRGL EDLIFAPTSK GKRKVVLSTN IAETSLTLEG VVYVVDSGFS KQKCYNPISD IESLVVAPIS KASARQRAGR
701: AGRVRPGKCF RIYTEEYYLT EMQSEGIPEM QRSNLVSCII QLKALGIDNI LGFDWPASPS PEAMIRALEV LFSLGILDED AKLTVPIGFQ VAEIPLDPMI
801: SKMILSANDF GCSDEILTIA SFLSVQSVWV SVRGVKKEFD EAKLRFAAAE GDHVTFLNIY KGFHQSGKSS QWCYKNFLNY QALKKVVDIR GQLLRIVKSF
901: GIQLKSCDRD MQAVRKAIIA GSFTNACHLE LTNGNLSVSP GKHSQGD

Best Arabidopsis Sequence Match ( AT4G18465.1 )
(BLAST)

001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.