Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0301500-01 | Rice | nucleus | 43.77 | 99.08 |
| CDY51663 | Canola | nucleus | 4.85 | 95.24 |
| EER95349 | Sorghum | nucleus | 95.55 | 95.09 |
| CDX91491 | Canola | nucleus | 4.77 | 93.65 |
| PGSC0003DMT400084916 | Potato | nucleus | 59.87 | 92.38 |
| CDY23338 | Canola | cytosol | 30.66 | 89.81 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 88.59 | 88.74 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 88.03 | 88.17 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 88.35 | 87.92 |
| GSMUA_Achr10P... | Banana | nucleus | 68.77 | 87.18 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 88.35 | 84.72 |
| VIT_08s0056g00470.t01 | Wine grape | nucleus | 78.96 | 83.06 |
| CDX83624 | Canola | nucleus | 74.03 | 82.06 |
| KRH05918 | Soybean | nucleus | 79.37 | 81.95 |
| KRH17401 | Soybean | nucleus | 79.69 | 81.88 |
| KRG97372 | Soybean | nucleus | 64.0 | 81.8 |
| AT3G26560.1 | Thale cress | nucleus | 77.27 | 81.76 |
| CDY13640 | Canola | nucleus | 74.35 | 81.69 |
| Solyc07g039550.2.1 | Tomato | nucleus | 77.83 | 80.84 |
| Solyc01g110990.2.1 | Tomato | nucleus | 72.25 | 80.38 |
| Bra025211.1-P | Field mustard | nucleus | 75.4 | 79.59 |
| PGSC0003DMT400056692 | Potato | nucleus | 72.9 | 78.97 |
| Bra040091.1-P | Field mustard | nucleus | 50.24 | 78.51 |
| Zm00001d031581_P002 | Maize | nucleus | 64.89 | 60.57 |
| Zm00001d028923_P002 | Maize | nucleus | 29.13 | 49.93 |
| Zm00001d049980_P001 | Maize | plasma membrane | 26.54 | 46.99 |
| Zm00001d047601_P006 | Maize | nucleus | 28.96 | 46.31 |
| Zm00001d011963_P002 | Maize | plasma membrane | 25.57 | 43.83 |
| Zm00001d045147_P015 | Maize | nucleus | 23.71 | 41.5 |
| Zm00001d045376_P001 | Maize | cytosol | 9.06 | 33.94 |
| Zm00001d039380_P001 | Maize | nucleus | 24.68 | 32.21 |
| Zm00001d006459_P003 | Maize | plastid | 34.39 | 31.57 |
| Zm00001d032735_P001 | Maize | plastid | 21.44 | 25.63 |
| Zm00001d019056_P001 | Maize | nucleus | 3.88 | 24.0 |
| Zm00001d034013_P002 | Maize | golgi, mitochondrion, vacuole | 21.76 | 22.44 |
| Zm00001d017967_P003 | Maize | nucleus | 22.17 | 21.42 |
| Zm00001d040082_P003 | Maize | plastid | 21.52 | 18.91 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 18.37 | 17.46 |
| Zm00001d003655_P006 | Maize | nucleus, plastid | 19.98 | 17.35 |
| Zm00001d022176_P002 | Maize | nucleus | 19.74 | 13.93 |
Protein Annotations
| EntrezGene:103626876 | Gene3D:2.40.50.140 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6H4I5 | ProteinID:AQK69738.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR003029 | InterPro:IPR014001 |
| InterPro:NA-bd_OB-fold | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00575 | PFAM:PF04408 |
| PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS50126 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 |
| PANTHER:PTHR18934:SF120 | InterPro:S1_dom | InterPro:S1_domain | SMART:SM00316 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF50249 | SUPFAM:SSF52540 | UniParc:UPI0002210E43 | EnsemblPlantsGene:Zm00001d015893 | EnsemblPlants:Zm00001d015893_P001 |
| EnsemblPlants:Zm00001d015893_T001 | SEG:seg | : | : | : | : |
Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Coordinates
chr5:+:129691571..129697192
Molecular Weight (calculated)
139737.0 Da
IEP (calculated)
6.466
GRAVY (calculated)
-0.643
Length
1236 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAPAAAEAGP GDDGLRKLEY LSLVSKVCSE LETHIGVGDK VLAEFITELG RDSTTVPEFD AKLKEKGADF PDYFVRTLLT IIHAILQPTA SNPSAATVAE
0101: GPAGAESAKF PGLARPDDPD HARNLRLELE RDADAAPPAP MRDDRDRRWD GRGRDRDYGR GGREHDQDRG GRDHDRDRRD RDRGRDREYG RDRDRGRDRE
0201: YGHDRDRGRD REYGRDRDHD HVRDRDGERL HDGDRDTGRN RVRDLGRSRR YADDEEEERG NVGRGREVAV SNPSGEPELY QVYRGRVTRV MDTGCFVRLD
0301: DVRGGHEGLV HVSQMASRRV ANAKEVVKRD QEVYVKVVSV KGQKLSLSMR DVDQDTGKDL LPMQRGGDDA PRVNPSGGRG SGMGSGKRLG LSGIVITEED
0401: EAAPTSRRPL KRMSSPERWE AKQLIASGVL DVRDYPMFDE DGDGMMYQEE GAEEELEIEL NEDEPAFLQG QSRFSIDMSP VKIFKNPEGS LSRAAALQTA
0501: LIKERREVRE QEQRAMLDSI PKDLNRPWED PMPDTGERHL AQELRGVGLS AYDMPEWKKE AYGKALTFGQ RSKLSIQEQR QSLPIYKLKK ELIQAVHDNQ
0601: VLVVIGETGS GKTTQVTQYL AEAGYTTRGK IGCTQPRRVA AMSVAKRVAE EFGCRLGEEV GYAIRFEDCT GPDTVIKYMT DGMLLREILV DENLSQYSVI
0701: MLDEAHERTI HTDVLFGLLK QLIKRRSDMR LIVTSATLDA EKFSGYFFNC NIFTIPGRTF PVEILYTKQP ESDYLDAALI TVLQIHLTEP EGDILVFLTG
0801: QEEIDHACQC LYERMKGLGR DVPELIILPV YSALPSEMQS KIFDPAPPGK RKVVVATNIA EASLTIDGIY YVVDPGFAKI NVYNSKQGLD SLVITPISQA
0901: SAKQRAGRAG RTGPGKCYRL YTESAYRNEM SPTTIPEIQR INLGSTVLNM KAMGINDLLS FDFMDPPAPQ ALISAMEQLY SLGALDEEGL LTKLGRKMAE
1001: FPLDPPLSKM LLASVDLGCS DEILTIIAMI QTGNIFYRPR EKQAQADQKR AKFFQPEGDH LTLLAVYEAW KAKNFSGPWC FENFVQSRSL RRAQDVRKQL
1101: LTIMDRYKLD VVSAGKNFTK IRKAITAGFF FHAARKDPQE GYRTLVENQP VYIHPSSALF QRQPDWVIYH ELVMTTKEYM REVTVIDPKW LVELAPRFYK
1201: GADPTKMSKR KRQERIEPLY DRYHEPNSWR LSKRRA
0101: GPAGAESAKF PGLARPDDPD HARNLRLELE RDADAAPPAP MRDDRDRRWD GRGRDRDYGR GGREHDQDRG GRDHDRDRRD RDRGRDREYG RDRDRGRDRE
0201: YGHDRDRGRD REYGRDRDHD HVRDRDGERL HDGDRDTGRN RVRDLGRSRR YADDEEEERG NVGRGREVAV SNPSGEPELY QVYRGRVTRV MDTGCFVRLD
0301: DVRGGHEGLV HVSQMASRRV ANAKEVVKRD QEVYVKVVSV KGQKLSLSMR DVDQDTGKDL LPMQRGGDDA PRVNPSGGRG SGMGSGKRLG LSGIVITEED
0401: EAAPTSRRPL KRMSSPERWE AKQLIASGVL DVRDYPMFDE DGDGMMYQEE GAEEELEIEL NEDEPAFLQG QSRFSIDMSP VKIFKNPEGS LSRAAALQTA
0501: LIKERREVRE QEQRAMLDSI PKDLNRPWED PMPDTGERHL AQELRGVGLS AYDMPEWKKE AYGKALTFGQ RSKLSIQEQR QSLPIYKLKK ELIQAVHDNQ
0601: VLVVIGETGS GKTTQVTQYL AEAGYTTRGK IGCTQPRRVA AMSVAKRVAE EFGCRLGEEV GYAIRFEDCT GPDTVIKYMT DGMLLREILV DENLSQYSVI
0701: MLDEAHERTI HTDVLFGLLK QLIKRRSDMR LIVTSATLDA EKFSGYFFNC NIFTIPGRTF PVEILYTKQP ESDYLDAALI TVLQIHLTEP EGDILVFLTG
0801: QEEIDHACQC LYERMKGLGR DVPELIILPV YSALPSEMQS KIFDPAPPGK RKVVVATNIA EASLTIDGIY YVVDPGFAKI NVYNSKQGLD SLVITPISQA
0901: SAKQRAGRAG RTGPGKCYRL YTESAYRNEM SPTTIPEIQR INLGSTVLNM KAMGINDLLS FDFMDPPAPQ ALISAMEQLY SLGALDEEGL LTKLGRKMAE
1001: FPLDPPLSKM LLASVDLGCS DEILTIIAMI QTGNIFYRPR EKQAQADQKR AKFFQPEGDH LTLLAVYEAW KAKNFSGPWC FENFVQSRSL RRAQDVRKQL
1101: LTIMDRYKLD VVSAGKNFTK IRKAITAGFF FHAARKDPQE GYRTLVENQP VYIHPSSALF QRQPDWVIYH ELVMTTKEYM REVTVIDPKW LVELAPRFYK
1201: GADPTKMSKR KRQERIEPLY DRYHEPNSWR LSKRRA
0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEGGV DQEKRFSVAV
0301: QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV RRSLPIYTYR
0401: DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM TDGMLLRELL
0501: GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI VTILTIHVRE
0601: PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK MKSYNPRTGM
0701: ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL FALGALNKLG
0801: ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST QWCYENYIQV
0901: RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK EYMRQVTELK
1001: PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEGGV DQEKRFSVAV
0301: QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV RRSLPIYTYR
0401: DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM TDGMLLRELL
0501: GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI VTILTIHVRE
0601: PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK MKSYNPRTGM
0701: ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL FALGALNKLG
0801: ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST QWCYENYIQV
0901: RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK EYMRQVTELK
1001: PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM
Arabidopsis Description
ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.