Factsheet for VIT_08s0056g00470.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51663	Canola	nucleus	5.28	98.41
CDX91491	Canola	nucleus	5.19	96.83
Os02t0301500-01	Rice	nucleus	44.34	95.42
PGSC0003DMT400084916	Potato	nucleus	64.26	94.26
CDY23338	Canola	cytosol	32.85	91.47
GSMUA_Achr10P...	Banana	nucleus	71.74	86.46
CDX83624	Canola	nucleus	81.36	85.74
KRH05918	Soybean	nucleus	87.32	85.71
CDY13640	Canola	nucleus	81.7	85.33
KRH17401	Soybean	nucleus	87.23	85.2
Solyc01g110990.2.1	Tomato	nucleus	80.51	85.15
AT3G26560.1	Thale cress	nucleus	84.26	84.76
Solyc07g039550.2.1	Tomato	nucleus	85.62	84.54
Bra025211.1-P	Field mustard	nucleus	82.98	83.26
KRG97372	Soybean	nucleus	68.51	83.25
PGSC0003DMT400056692	Potato	nucleus	80.34	82.73
Bra040091.1-P	Field mustard	nucleus	54.13	80.4
TraesCS4B01G148500.1	Wheat	nucleus	83.23	79.25
Zm00001d015893_P001	Maize	nucleus, plasma membrane	83.06	78.96
TraesCS4A01G158200.1	Wheat	nucleus	82.72	78.77
EER95349	Sorghum	nucleus	82.98	78.5
HORVU0Hr1G007860.1	Barley	nucleus	82.89	78.42
TraesCS4D01G147900.1	Wheat	nucleus	82.98	75.64
Os06t0343100-01	Rice	nucleus	68.43	74.17
EES15324	Sorghum	nucleus	66.89	73.39
TraesCS7B01G245800.1	Wheat	nucleus	65.53	71.56
TraesCS7D01G341800.1	Wheat	nucleus	65.79	71.44
Zm00001d031581_P002	Maize	nucleus	65.7	58.31
VIT_07s0005g01770.t01	Wine grape	nucleus	30.72	49.59
VIT_10s0003g00810.t01	Wine grape	nucleus	27.32	46.25
VIT_01s0010g02920.t01	Wine grape	nucleus	33.28	44.69
VIT_01s0137g00640.t01	Wine grape	nucleus	27.49	44.49
VIT_01s0010g02780.t01	Wine grape	nucleus	23.15	42.5
VIT_17s0000g06950.t01	Wine grape	nucleus	36.77	40.99
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	23.06	26.44
VIT_17s0000g03030.t01	Wine grape	nucleus	22.04	24.5
VIT_01s0011g04360.t01	Wine grape	plastid	22.04	21.93
VIT_07s0005g00860.t01	Wine grape	nucleus	24.0	21.35
VIT_12s0028g01050.t01	Wine grape	nucleus	19.06	18.2
VIT_12s0035g00800.t01	Wine grape	nucleus	20.09	17.24
VIT_07s0191g00210.t01	Wine grape	nucleus	19.83	13.41

Protein Annotations

EntrezGene:100241659	wikigene:100241659	Gene3D:2.40.50.140	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB55956
ProteinID:CCB55956.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	UniProt:F6HMT1
EMBL:FN595995	GO:GO:0000166	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506
GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR003029	InterPro:IPR014001	EntrezGene:LOC100241659	wikigene:LOC100241659	InterPro:NA-bd_OB-fold	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF00575	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690
PFscan:PS50126	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF120	InterPro:S1_dom
InterPro:S1_domain	SMART:SM00316	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF50249
SUPFAM:SSF52540	TIGR:TC63225	UniParc:UPI0001983A5F	ArrayExpress:VIT_08s0056g00470	EnsemblPlantsGene:VIT_08s0056g00470	EnsemblPlants:VIT_08s0056g00470.t01
RefSeq:XP_002268542	RefSeq:XP_002268542.1	RefSeq:XP_003632558	RefSeq:XP_003632558.1	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:699450..704368

Molecular Weight (calculated)

134212.0 Da

IEP (calculated)

7.199

GRAVY (calculated)

-0.670

Length

1175 amino acids

Sequence
(BLAST)

0001: MSVDAQNDGL KKLEYLSLVS KVCTELETHL GVGDKVLAEF ITDMGRKCET VDEFDSKLKE NGAEMPDYFV RTLLTIIHAI LPPKPKSDDK GMKKDGGDGK
0101: KSKFPALGIG DSKERVRELE REIEIESRDR RREEEEAKHR DERNRDRDGD RERDDRRERH RERNDRSERH RERDDRNERH RERADRSERH RERDDGSERD
0201: GGDRRGDRDR RNGRYHSDEP ELYNVYKGRV SRVMDTGCFV QLNDLKGKEG LVHVSQIATR RVGNAKDVVK RDQEVYVKVI SVSGQKLSLS MRDVDQNTGR
0301: DLIPLKKSLE DDALRTNPSG ANQGPVSRTG LSGIRIVEEN DAAPSRRPLK RMSSPEKWEA KQLIASGVLD IREFPMYDDE GDGMLYQEEG AEEELEIEMN
0401: EDEPAFLQGQ SRYSMDMSPV KIFKNPEGSL SRAAALQSAL IKERREVREQ QQRTMLDSIP KDLNRPWEDP MPETGERHLA QELRGVGLSA YDMPEWKKDA
0501: FGKALTFGQR SKLSIQEQRQ SLPIYKLKKE LVQAVHDNQV LVVIGETGSG KTTQVTQYLA EAGYTTRGKI GCTQPRRVAA MSVAKRVAEE FGCRLGEEVG
0601: YAIRFEDCTG PDTVIKYMTD GMLLREILID DNLSQYSVIM LDEAHERTIH TDVLFGLLKH LVKRRPDLRL IVTSATLDAE KFSGYFFNCN IFTIPGRTFP
0701: VEILYTKQPE SDYLDASLIT VLQIHLTEPE GDILLFLTGQ EEIDHACQSL YERMKGLGKN VPELIILPVY SALPSEMQSR IFDPAPPGKR KVVVATNIAE
0801: ASLTIDGIFY VIDPGFAKQN VYNPKQGLDS LVITPISQAS AKQRAGRAGR TGPGKCYRLY TESAYRNEMS PTSVPEIQRI NLGLTTLTMK AMGINDLLSF
0901: DFMDPPSPQA LISAMEQLYS LGALDEEGLL TKLGRKMAEF PLEPPLSKML LASVDLGCSD EILTIIAMIQ TGNIFYRPRE KQAQADQKRA KFFQPEGDHL
1001: TLLAVYEAWK AKNFSGPWCF ENFVQSRSLR RAQDVRKQLL TIMDKYKLDV VSAGKNFTKI RKAITAGFFF HAARKDPQEG YRTLVENQPV YIHPSSALFQ
1101: RQPDWVIYHE LVMTTKEYMR EVTVIDPKWL VELAPRFFKV ADPTKMSKRK RQERIEPLYD RYHEPNSWRL SKRRA

Best Arabidopsis Sequence Match ( AT3G26560.1 )
(BLAST)

0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.