Factsheet for VIT_12s0035g00800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0432200-00	Rice	extracellular	3.8	71.23
KRH01863	Soybean	nucleus	68.3	65.02
Solyc01g103690.2.1	Tomato	nucleus	67.06	63.84
AT1G58060.1	Thale cress	nucleus	66.03	61.96
CDY39917	Canola	nucleus	62.82	60.86
CDY29164	Canola	nucleus	63.11	60.67
Bra027890.1-P	Field mustard	nucleus	57.2	58.87
AT1G58050.1	Thale cress	nucleus	58.51	56.53
GSMUA_Achr6P17860_001	Banana	nucleus	56.39	54.25
TraesCS2A01G304100.1	Wheat	nucleus, plastid	55.81	53.46
TraesCS2B01G320800.1	Wheat	nucleus, plastid	55.59	53.29
KXG26332	Sorghum	nucleus, plastid	55.44	53.23
Zm00001d003655_P006	Maize	nucleus, plastid	55.3	53.16
TraesCS2D01G302700.1	Wheat	plastid	55.37	53.04
CDY63687	Canola	nucleus, plastid	39.88	49.19
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	25.27	33.76
VIT_17s0000g03030.t01	Wine grape	nucleus	22.94	29.71
VIT_10s0003g00810.t01	Wine grape	nucleus	14.68	28.96
VIT_07s0005g01770.t01	Wine grape	nucleus	15.27	28.71
VIT_01s0011g04360.t01	Wine grape	plastid	24.11	27.94
VIT_01s0137g00640.t01	Wine grape	nucleus	14.32	27.0
VIT_01s0010g02780.t01	Wine grape	nucleus	11.69	25.0
VIT_01s0010g02920.t01	Wine grape	nucleus	15.34	24.0
VIT_12s0028g01050.t01	Wine grape	nucleus	20.89	23.23
VIT_17s0000g06950.t01	Wine grape	nucleus	16.8	21.82
VIT_08s0056g00470.t01	Wine grape	nucleus	17.24	20.09
VIT_07s0005g00860.t01	Wine grape	nucleus	14.83	15.37
VIT_07s0191g00210.t01	Wine grape	nucleus	14.17	11.17

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	EMBL:AM443787	ProteinID:CAN65165	ProteinID:CAN65165.1
ProteinID:CCB55053	ProteinID:CCB55053.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	UniProt:F6HK50
EMBL:FN595990	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF190	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	TIGR:TC69047	UniParc:UPI0002108AE5	ArrayExpress:VIT_12s0035g00800	EnsemblPlantsGene:VIT_12s0035g00800
EnsemblPlants:VIT_12s0035g00800.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:20272583..20396375

Molecular Weight (calculated)

151947.0 Da

IEP (calculated)

6.467

GRAVY (calculated)

-0.377

Length

1369 amino acids

Sequence
(BLAST)

0001: MAPKKKQQQN KPSSSKSKSK SQTSAGPKLQ ISAENENRLR RLLLNSGRSG PASSPAPADD TLSKAQKAKK LRSVYEKLSC EGFSNDHIEL ALSALKEGAT
0101: FESALDWLCF NLSSNELPLK FSSGTSLHAN EGGSIGIIST AREDWTPSVY SSGNIEDDEV SGISIRIKGR RDDDSVDSRQ QSQADWIRQY VAQQEEDESK
0201: TWEDDAVDDY STKKVAEPRS YETIAKEYHA ARLEALSAKE KGDKKGQEQA GHIIRKLKQE LSALGLSDNS LESGFRYEHA SGFASEDMSY NSMPEKHPEA
0301: ITLCEVEGGS VMHPSESTFD GSIKECFSST ELSMNSVSSS VPLEERIAAQ EDSGDVELSN FFEDAPSSEV LPHEVLKLQN KEKMKELSSG KNLEKLEGIW
0401: KKGDPQKIPK AVLHQLCQRS GWEAPKLNKV LGKENGFCYA VSVLRKSTGR GKSRKAGGLT TLELPDQLEA FESAEDAQNA VAAYALYQLF PDLPIHLAIT
0501: EPYASFVIQW KEGESSIRIE DSEEDRRAGF VNSILDAGDS GSTAFVDVTD NSLPKKFQMP QIEENRNLNA AGPDLKPGRV GNFKEAESSY LKQEYENKMK
0601: IGKYKDMLKT RSGLPIAELK SEILQVLKEK SVLVVCGETG SGKTTQVPQF ILDDMIEAGN GGYCNIICTQ PRRIAAISVA ERVADERCEP SPGSDGSVVG
0701: YQVRLDSASN VRTKLLFCTT GILLRKLAGD KNLSGITHVI VDEVHERSLL TSAVNNRRGK RNLVLSAWGD DSVLSEECIN PYYVPNAYQS YSEKTQQNLK
0801: RLNEDVIDYD LLEDLVCYVD ETYPAGAILV FLPGVAEIYM LLDKLAASYR FRGLSSDWLL PLHSSIASDD QRKVFLQPPE NIRKVIIATN IAETSITIDD
0901: VVYVIDCGKH KENRYNPQKK LSSMVEDWIS QANAKQRRGR AGRVKPGICF SLYTHYRFEK LLRPFQVPEM LRMPLVELCL QIKLLSLGNI KPFLSKALEP
1001: PTEEAMTSAI SVLYEVGAIE GDEELTPLGH HLAKLPVDVL IGKMMLYGAI FGCLSPILSI SAFLSYKSPF LSPKDERQNV ERAKLALLTD QVDGASDSND
1101: GARQSDHLVM MVAYKKWERI LHEKGAKAAQ HFCNSYFLSS SVMHMIRDMR VQFGNLLADI GLISLPKKYQ IERKKKENLN SWFSDISQPF NTYSHHFSIV
1201: KAILCAGLYP NVAATEQGIA GVALGNIIQS SGSATKGRPV WYDGRREVHI HPSSINGNLN AFQYPFLVFL EKVETNKVFL RDTTIISPYS ILLFGGSINV
1301: QHQSGMVNID GWLKLAAPAQ IAVLFKELRV TLHSVLKELI RKPEKAIVVN NEVVKSIIHL LLEEEKSPK

Best Arabidopsis Sequence Match ( AT1G58060.1 )
(BLAST)

0001: MAPKKKPQKQ SNKAASSSSS SKSNYQKPSS GPKLQISAEN EDRLRRLLLN SGRSGPSIPA PISNSLSKAQ KTKKLNNVYE KLSCEGFVDD QIELALSSLR
0101: DGATFEAALD WLCLNLPSHE LPVKFSTGAS RFPSTGGSVG VISTSRDDWN DSTDSSVRVE EEEPAVFVRV KGKQDEEDTL SSDKSSQADW IRQYMMRQEE
0201: EELECWEDEV DGIDPRNKVS GPRPFDVIAK EYYSARSDAI KAKEKRDKRG QEQAGLAIRK LKQEISDLGL SEAMLESEFQ REHAFESATE QESTCPISDN
0301: LHESVDADDV SVQMLDNLTL NTNPAESYES EEIQTKALPS SSSGQDFVAS DEDSEDVELG DTFFEEIPPS EISPHELLEL QKEEKMRELR SEKNLGKLDG
0401: IWKKGEAQKI PKAFLHQLCQ RSGWEAPKFN KETGEGRNFS YTVSILRKAS GRGKNRQAGG LVTLQLPPKD ENFESIEDAQ NKVAAFALHK LFSDLPVHFA
0501: ITEPYASLVL IWKQEELLCT TIQSTEEDRR ANFVDKLLEE DSFSLTTSSS SFENSLPLVD SYVKDKDDLG VVKSNNRAKR DSYIEAECLS LQRKQENKKR
0601: TQKYKDMLKT RTALPISEVK NGILQHLKEK DVLVVCGETG SGKTTQVPQF ILDDMIDSGH GGYCNIICTQ PRRIAAISVA QRVADERCES SPGLDDSLVG
0701: YQVRLESARS DKTRLLFCTT GILLRKLAGD RTLNDVTHII VDEVHERSLL GDFLLIILKS LIEKQSCDNT SRKLKVILMS ATVDADLFSR YFGHCPVITA
0801: QGRTHPVTTH FLEEIYESIN YLLAPDSPAA LRSDTSIKDK LGSVNDRRGK KNLVLAGWGD DYLLSEDCLN PFYVSSNYNS YSDQTQQNLK RLNEDRIDYE
0901: LLEELICHID DTCEEGAILI FLPGVAEIYM LLDMLAASYR FRGPAADWLL PLHSSIASSE QRKVFLRPPK GLRKVIAATN IAETSITIDD VVYVIDSGKH
1001: KENRYNPQKK LSSMVEDWIS QANARQRTGR AGRVKPGICF SLYTRYRFEK LMRPYQVPEM LRMPLVELCL QIKLLGLGHI KPFLSRALEP PSEGAMTSAI
1101: SLLHEVGAVE GDEELTPLGH HLAKLPVDVL IGKMLLYGGI FGCLSPILSI AAFLSYKSPF IYPKDEKQNV DRVKLALLSD NGVSSSDLNN NDRQSDHLLM
1201: MVAYDKWVKI LQERGMKAAQ RFCESKFLSS SVMRMIRDMR VQFGTLLADI GLINLPKTGE FSGRKKENLD VWFSDPTQPF NMYSQQPEVV KAILCAGLYP
1301: NIAANDKGIT ETTFNSLTKQ GNQTKSYSAW YDGRREVHIH PSSINSNFKA FQNPFLVFLE KVETNKVYLR DTTIVSPFSI LLFGGSINVH HQSGSVTIDG
1401: WLKVAAPAQT AVLFKELRLT LHSILKDLIR KPEKSGIVHN EVVKSMVHLL IEEGKPQHK

Arabidopsis Description

DExH-box ATP-dependent RNA helicase DExH7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I9Q5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.