Factsheet for AT1G58060.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29164	Canola	nucleus	85.4	87.5
CDY39917	Canola	nucleus	84.58	87.33
Bra027890.1-P	Field mustard	nucleus	78.96	86.62
AT1G58050.1	Thale cress	nucleus	74.43	76.64
VIT_12s0035g00800.t01	Wine grape	nucleus	61.96	66.03
Solyc01g103690.2.1	Tomato	nucleus	62.65	63.56
KRH01863	Soybean	nucleus	62.23	63.14
Os04t0432200-00	Rice	extracellular	3.02	60.27
GSMUA_Achr6P17860_001	Banana	nucleus	53.67	55.02
KXG26332	Sorghum	nucleus, plastid	52.84	54.07
Zm00001d003655_P006	Maize	nucleus, plastid	52.5	53.79
TraesCS2A01G304100.1	Wheat	nucleus, plastid	52.3	53.39
TraesCS2B01G320800.1	Wheat	nucleus, plastid	52.09	53.22
TraesCS2D01G302700.1	Wheat	plastid	51.88	52.97
AT2G35920.3	Thale cress	plastid	26.25	37.29
AT2G01130.1	Thale cress	nucleus	24.95	32.7
AT1G26370.1	Thale cress	plastid	15.9	32.36
AT4G18465.1	Thale cress	nucleus	14.67	30.79
AT5G04895.1	Thale cress	mitochondrion	24.33	30.58
AT2G47250.1	Thale cress	nucleus	15.08	30.18
AT3G62310.1	Thale cress	nucleus	14.8	29.75
AT1G48650.2	Thale cress	nucleus, plastid	24.54	29.68
AT1G27900.1	Thale cress	nucleus	14.19	29.57
AT4G16680.2	Thale cress	nucleus	16.11	29.52
AT1G32490.1	Thale cress	cytosol	17.68	24.71
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	17.55	24.52
AT2G30800.1	Thale cress	nucleus	20.77	23.33
AT5G14900.1	Thale cress	cytosol	4.66	22.59
AT3G26560.1	Thale cress	nucleus	17.14	21.4
AT5G13010.1	Thale cress	nucleus	16.59	19.28
AT1G06670.1	Thale cress	nucleus	19.47	18.02
AT1G33390.2	Thale cress	nucleus	15.15	17.87
AT5G10370.1	Thale cress	nucleus	16.52	13.58
AT4G01020.1	Thale cress	nucleus	16.38	13.37

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:842173	ProteinID:AAG50701.1
ProteinID:AEE33493.1	EMBL:AK227490	ArrayExpress:AT1G58060	EnsemblPlantsGene:AT1G58060	RefSeq:AT1G58060	TAIR:AT1G58060
RefSeq:AT1G58060-TAIR-G	EnsemblPlants:AT1G58060.1	TAIR:AT1G58060.1	Unigene:At.27872	EMBL:BT004601	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	UniProt:F4I9Q5	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	RefSeq:NP_176103.2
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PO:PO:0000293
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF190	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI00001970C8	SEG:seg	:	:

Description

DExH-box ATP-dependent RNA helicase DExH7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I9Q5]

Coordinates

chr1:-:21489284..21501890

Molecular Weight (calculated)

163609.0 Da

IEP (calculated)

6.105

GRAVY (calculated)

-0.441

Length

1459 amino acids

Sequence
(BLAST)

0001: MAPKKKPQKQ SNKAASSSSS SKSNYQKPSS GPKLQISAEN EDRLRRLLLN SGRSGPSIPA PISNSLSKAQ KTKKLNNVYE KLSCEGFVDD QIELALSSLR
0101: DGATFEAALD WLCLNLPSHE LPVKFSTGAS RFPSTGGSVG VISTSRDDWN DSTDSSVRVE EEEPAVFVRV KGKQDEEDTL SSDKSSQADW IRQYMMRQEE
0201: EELECWEDEV DGIDPRNKVS GPRPFDVIAK EYYSARSDAI KAKEKRDKRG QEQAGLAIRK LKQEISDLGL SEAMLESEFQ REHAFESATE QESTCPISDN
0301: LHESVDADDV SVQMLDNLTL NTNPAESYES EEIQTKALPS SSSGQDFVAS DEDSEDVELG DTFFEEIPPS EISPHELLEL QKEEKMRELR SEKNLGKLDG
0401: IWKKGEAQKI PKAFLHQLCQ RSGWEAPKFN KETGEGRNFS YTVSILRKAS GRGKNRQAGG LVTLQLPPKD ENFESIEDAQ NKVAAFALHK LFSDLPVHFA
0501: ITEPYASLVL IWKQEELLCT TIQSTEEDRR ANFVDKLLEE DSFSLTTSSS SFENSLPLVD SYVKDKDDLG VVKSNNRAKR DSYIEAECLS LQRKQENKKR
0601: TQKYKDMLKT RTALPISEVK NGILQHLKEK DVLVVCGETG SGKTTQVPQF ILDDMIDSGH GGYCNIICTQ PRRIAAISVA QRVADERCES SPGLDDSLVG
0701: YQVRLESARS DKTRLLFCTT GILLRKLAGD RTLNDVTHII VDEVHERSLL GDFLLIILKS LIEKQSCDNT SRKLKVILMS ATVDADLFSR YFGHCPVITA
0801: QGRTHPVTTH FLEEIYESIN YLLAPDSPAA LRSDTSIKDK LGSVNDRRGK KNLVLAGWGD DYLLSEDCLN PFYVSSNYNS YSDQTQQNLK RLNEDRIDYE
0901: LLEELICHID DTCEEGAILI FLPGVAEIYM LLDMLAASYR FRGPAADWLL PLHSSIASSE QRKVFLRPPK GLRKVIAATN IAETSITIDD VVYVIDSGKH
1001: KENRYNPQKK LSSMVEDWIS QANARQRTGR AGRVKPGICF SLYTRYRFEK LMRPYQVPEM LRMPLVELCL QIKLLGLGHI KPFLSRALEP PSEGAMTSAI
1101: SLLHEVGAVE GDEELTPLGH HLAKLPVDVL IGKMLLYGGI FGCLSPILSI AAFLSYKSPF IYPKDEKQNV DRVKLALLSD NGVSSSDLNN NDRQSDHLLM
1201: MVAYDKWVKI LQERGMKAAQ RFCESKFLSS SVMRMIRDMR VQFGTLLADI GLINLPKTGE FSGRKKENLD VWFSDPTQPF NMYSQQPEVV KAILCAGLYP
1301: NIAANDKGIT ETTFNSLTKQ GNQTKSYSAW YDGRREVHIH PSSINSNFKA FQNPFLVFLE KVETNKVYLR DTTIVSPFSI LLFGGSINVH HQSGSVTIDG
1401: WLKVAAPAQT AVLFKELRLT LHSILKDLIR KPEKSGIVHN EVVKSMVHLL IEEGKPQHK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.