Factsheet for AT4G16680.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60185	Canola	nucleus	79.27	73.46
CDY40514	Canola	nucleus	78.52	72.59
Bra038498.1-P	Field mustard	nucleus	79.65	70.37
Os08t0335000-00	Rice	cytosol, nucleus	32.04	69.48
GSMUA_Achr4P23370_001	Banana	nucleus	57.91	61.47
PGSC0003DMT400005723	Potato	nucleus	60.93	59.0
Zm00001d049980_P001	Maize	plasma membrane	51.01	58.17
Solyc12g017700.1.1	Tomato	nucleus	60.55	54.4
AT1G32490.1	Thale cress	cytosol	64.45	49.14
KXG30390	Sorghum	nucleus	64.07	48.76
TraesCS4B01G374800.1	Wheat	nucleus	63.82	48.57
TraesCS4D01G362600.1	Wheat	nucleus	63.69	48.47
EES02741	Sorghum	nucleus	63.57	48.37
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	62.69	47.8
AT3G62310.1	Thale cress	nucleus	42.84	46.97
AT2G47250.1	Thale cress	nucleus	42.21	46.09
HORVU4Hr1G088270.17	Barley	mitochondrion	61.31	45.19
AT4G18465.1	Thale cress	nucleus	37.94	43.45
AT1G26370.1	Thale cress	plastid	36.93	41.0
AT1G27900.1	Thale cress	nucleus	35.55	40.43
AT5G14900.1	Thale cress	cytosol	14.45	38.21
AT3G26560.1	Thale cress	nucleus	46.98	32.02
AT5G13010.1	Thale cress	nucleus	42.34	26.85
AT2G35920.3	Thale cress	plastid	29.9	23.17
AT2G01130.1	Thale cress	nucleus	28.89	20.66
AT1G33390.2	Thale cress	nucleus	31.78	20.45
AT1G48650.2	Thale cress	nucleus, plastid	29.4	19.4
AT5G04895.1	Thale cress	mitochondrion	28.27	19.38
AT1G58060.1	Thale cress	nucleus	29.52	16.11
AT1G58050.1	Thale cress	nucleus	28.39	15.95
AT2G30800.1	Thale cress	nucleus	25.63	15.7
AT5G10370.1	Thale cress	nucleus	29.77	13.35
AT1G06670.1	Thale cress	nucleus	26.38	13.32
AT4G01020.1	Thale cress	nucleus	29.15	12.98

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.5	Gene3D:3.40.50.300	EntrezGene:827370	UniProt:A0A1P8B8G9	ProteinID:ANM67892.1
ArrayExpress:AT4G16680	EnsemblPlantsGene:AT4G16680	RefSeq:AT4G16680	TAIR:AT4G16680	RefSeq:AT4G16680-TAIR-G	EnsemblPlants:AT4G16680.2
Unigene:At.66586	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	RefSeq:NP_001329688.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	PIRSF:PIRSF005496	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF117	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
UniParc:UPI00084946DE	SEG:seg	:	:	:	:

Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G16680]

Coordinates

chr4:-:9388071..9391726

Molecular Weight (calculated)

90737.1 Da

IEP (calculated)

8.547

GRAVY (calculated)

-0.478

Length

796 amino acids

Sequence
(BLAST)

001: MREVIEFRYK RALYELVKKT EDDDDVEGYR FPDAYDQEGC IDQKKRFDVA KERYCERRRS GRVVTEQEAW EDHQAQKARV RFGAKDKKQV VDGYEFVFDD
101: LTGFVEESSE AETGKHRGCY SKTAAEKARE GREFLPIHGY REELLKLIEE NQVLVIVGET GSGKTTQIPQ YLQEAGYTKR GKIGCTQPRR VAAMSVASRV
201: AQEVGVKLGH EVGYSIRFED CTSEKTVIKY MTDGMLLREL LIEPKLDSYS VIIIDEAHER TLSTDILFAL VKDVAKVRPD LRLIISSATL EAKKFSEYFD
301: SARIYLIPGR RYPVEKLFRK CPEPDYLETV IRTVVQIHQT EAIGDILVFL TGQEEIETVE TNLKRRMMDL GTKGSEIIIC PIYSNLPTPL QAKVFEPAPK
401: GTRKVVLATN IAETSLTIDG VKYVIDPGYC KINSYNPRTG MESLLVTPIS KASAAQRAGR SGRTGPGKCF RLYNIKDLEP TTIPEIQRAN LASVVLTLKS
501: LGIQDVFNFD FMDPPPENAL LKALELLYAL GALDEIGEIT KVGERMVEFP VDPMLSKMIV GSEKYKCSKE IITIAAMLSV GNSVFYRPKN QQVFADKARM
601: DFYEDTENVG DHIALLRVYN SWKEENYSTQ WCCEKFIQSK SMKRARDIRD QLLGLLNKIG VELTSNPNDL DAIKKAILAG FFPHSAKLQK NGSYRRVKEP
701: QTVYVHPNSG LFGASPSKWL VYHELVLTTK EYMRHTTEMK PEWLIEIAPH YYKLKDIEDT RPKKTQRRIE EASTSKVDTN KKTRTSKVDT NKKSKR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.