Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH31768 | Soybean | cytosol, nucleus | 65.12 | 33.97 |
| AT3G62310.1 | Thale cress | nucleus | 76.08 | 31.54 |
| KRH68290 | Soybean | nucleus | 75.42 | 31.53 |
| KRG96553 | Soybean | nucleus | 75.08 | 31.35 |
| KRH69191 | Soybean | nucleus | 75.08 | 31.3 |
| Solyc01g079250.2.1 | Tomato | nucleus | 74.42 | 30.98 |
| PGSC0003DMT400023284 | Potato | nucleus | 74.42 | 30.98 |
| VIT_07s0005g01770.t01 | Wine grape | nucleus | 74.75 | 30.91 |
| AT2G47250.1 | Thale cress | nucleus | 74.75 | 30.86 |
| KXG39505 | Sorghum | cytosol | 73.09 | 30.47 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 72.43 | 30.32 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 72.43 | 30.24 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 72.43 | 30.24 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 72.09 | 30.1 |
| Zm00001d028923_P002 | Maize | nucleus | 71.76 | 29.96 |
| Zm00001d047601_P006 | Maize | nucleus | 72.09 | 28.07 |
| AT4G18465.1 | Thale cress | nucleus | 37.21 | 16.12 |
| AT4G16680.2 | Thale cress | nucleus | 38.21 | 14.45 |
| Os03t0314100-01 | Rice | cytosol, nucleus, plastid | 26.91 | 14.36 |
| AT1G26370.1 | Thale cress | plastid | 31.23 | 13.11 |
| AT1G27900.1 | Thale cress | nucleus | 29.9 | 12.86 |
| AT1G32490.1 | Thale cress | cytosol | 37.54 | 10.82 |
| AT2G35340.1 | Thale cress | endoplasmic reticulum, nucleus | 37.54 | 10.82 |
| AT3G26560.1 | Thale cress | nucleus | 37.21 | 9.59 |
| AT5G13010.1 | Thale cress | nucleus | 32.89 | 7.89 |
| AT2G35920.3 | Thale cress | plastid | 23.59 | 6.91 |
| AT5G04895.1 | Thale cress | mitochondrion | 24.58 | 6.37 |
| AT2G01130.1 | Thale cress | nucleus | 23.26 | 6.29 |
| AT1G48650.2 | Thale cress | nucleus, plastid | 24.92 | 6.22 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 6.98 | 5.9 |
| AT1G33390.2 | Thale cress | nucleus | 23.59 | 5.74 |
| AT2G30800.1 | Thale cress | nucleus | 22.92 | 5.31 |
| AT1G58060.1 | Thale cress | nucleus | 22.59 | 4.66 |
| AT1G58050.1 | Thale cress | nucleus | 20.6 | 4.38 |
| AT5G10370.1 | Thale cress | nucleus | 23.59 | 4.0 |
| AT4G01020.1 | Thale cress | nucleus | 23.26 | 3.92 |
| AT1G06670.1 | Thale cress | nucleus | 18.27 | 3.49 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:35.1 | EntrezGene:831342 | ProteinID:AED92087.1 | ArrayExpress:AT5G14900 | EnsemblPlantsGene:AT5G14900 |
| RefSeq:AT5G14900 | TAIR:AT5G14900 | RefSeq:AT5G14900-TAIR-G | EnsemblPlants:AT5G14900.1 | TAIR:AT5G14900.1 | Unigene:At.65514 |
| ProteinID:CAC01809.1 | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | RefSeq:NP_196994.1 | InterPro:P-loop_NTPase |
| PFAM:PF04408 | PFAM:PF07717 | PO:PO:0000084 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF193 | UniProt:Q9LFR5 |
| SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI00000AA189 | : | : | : |
Description
Helicase associated (HA2) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LFR5]
Coordinates
chr5:-:4822676..4823581
Molecular Weight (calculated)
34744.7 Da
IEP (calculated)
8.215
GRAVY (calculated)
-0.320
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNLANTVLT LKGLSVKNLV RFDLIDSPAP DTLARALDDL YHLGALDDDC NLTKTGEMMS EFPLDPQMAK MLIVSPQFNC SNEILSISAM LSVPNCFIRP
101: RGEAQKAADE AKSSFAHIDG DHLTLLNLFH AFLQNNQDPN WCCTKFINYR AMKSAVSVRE QLVRIMLRFQ IKLCSPDFNS RDYYVNIRKA LLAGYFMQVA
201: HLERTGHYLT FRDKDDQVVH LHPSNCLDHK PEWVVYNEYV FTSRNFIRTV THIRGEWLVD VAPHYYKLAN FPSSEAKRVL ERHYKKRKLS EERSCKLYSN
301: S
101: RGEAQKAADE AKSSFAHIDG DHLTLLNLFH AFLQNNQDPN WCCTKFINYR AMKSAVSVRE QLVRIMLRFQ IKLCSPDFNS RDYYVNIRKA LLAGYFMQVA
201: HLERTGHYLT FRDKDDQVVH LHPSNCLDHK PEWVVYNEYV FTSRNFIRTV THIRGEWLVD VAPHYYKLAN FPSSEAKRVL ERHYKKRKLS EERSCKLYSN
301: S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.