Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G01020.1 | Thale cress | nucleus | 94.7 | 94.07 |
| Bra006057.1-P | Field mustard | plastid | 80.28 | 81.2 |
| CDX81170 | Canola | plastid | 80.56 | 81.11 |
| CDX78376 | Canola | plastid | 80.17 | 80.99 |
| CDX96996 | Canola | nucleus | 77.63 | 77.9 |
| CDX69841 | Canola | plastid | 77.35 | 77.7 |
| Bra009038.1-P | Field mustard | plastid | 77.18 | 77.53 |
| KRG97543 | Soybean | nucleus, plastid | 55.83 | 57.32 |
| KRH31333 | Soybean | nucleus, plastid | 54.99 | 56.22 |
| PGSC0003DMT400041805 | Potato | nucleus | 49.8 | 54.5 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 37.35 | 53.81 |
| Solyc04g014210.2.1 | Tomato | nucleus | 51.61 | 52.95 |
| PGSC0003DMT400060759 | Potato | nucleus | 51.55 | 52.92 |
| Solyc11g010310.1.1 | Tomato | nucleus | 50.65 | 52.73 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 49.69 | 50.78 |
| OQU90279 | Sorghum | nucleus | 42.48 | 49.7 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 36.68 | 49.21 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 35.61 | 49.11 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 44.62 | 47.14 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 46.25 | 47.02 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 44.34 | 46.99 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 45.8 | 46.89 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 34.93 | 46.37 |
| Zm00001d022176_P002 | Maize | nucleus | 45.52 | 46.12 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 41.86 | 45.7 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 45.13 | 45.67 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 46.25 | 45.33 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 43.61 | 45.32 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 45.52 | 44.27 |
| AT4G18465.1 | Thale cress | nucleus | 12.9 | 32.95 |
| AT1G27900.1 | Thale cress | nucleus | 12.85 | 32.57 |
| AT1G26370.1 | Thale cress | plastid | 13.07 | 32.36 |
| AT3G62310.1 | Thale cress | nucleus | 12.79 | 31.27 |
| AT2G47250.1 | Thale cress | nucleus | 12.73 | 31.0 |
| AT4G16680.2 | Thale cress | nucleus | 13.35 | 29.77 |
| AT1G32490.1 | Thale cress | cytosol | 14.2 | 24.14 |
| AT5G14900.1 | Thale cress | cytosol | 4.0 | 23.59 |
| AT2G35340.1 | Thale cress | endoplasmic reticulum, nucleus | 13.58 | 23.08 |
| AT2G01130.1 | Thale cress | nucleus | 14.2 | 22.64 |
| AT3G26560.1 | Thale cress | nucleus | 14.82 | 22.52 |
| AT5G04895.1 | Thale cress | mitochondrion | 14.42 | 22.05 |
| AT2G35920.3 | Thale cress | plastid | 12.45 | 21.52 |
| AT1G48650.2 | Thale cress | nucleus, plastid | 13.97 | 20.56 |
| AT5G13010.1 | Thale cress | nucleus | 13.75 | 19.44 |
| AT1G33390.2 | Thale cress | nucleus | 12.56 | 18.03 |
| AT1G58050.1 | Thale cress | nucleus | 13.69 | 17.15 |
| AT1G58060.1 | Thale cress | nucleus | 13.58 | 16.52 |
| AT2G30800.1 | Thale cress | nucleus | 12.06 | 16.47 |
| AT1G06670.1 | Thale cress | nucleus | 12.17 | 13.71 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | EntrezGene:830901 |
| ProteinID:AED91533.1 | ArrayExpress:AT5G10370 | EnsemblPlantsGene:AT5G10370 | RefSeq:AT5G10370 | TAIR:AT5G10370 | RefSeq:AT5G10370-TAIR-G |
| EnsemblPlants:AT5G10370.1 | TAIR:AT5G10370.1 | Unigene:At.49004 | ProteinID:CAB89406.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | UniProt:F4KGU4 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0046872 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IBR_dom | InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR013087 | InterPro:IPR014001 |
| RefSeq:NP_196599.2 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01485 | PFAM:PF04408 |
| PFAM:PF07717 | PFAM:PF13445 | PO:PO:0000293 | ScanProsite:PS00028 | ScanProsite:PS00518 | ScanProsite:PS00690 |
| PFscan:PS50089 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00647 | SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF57850 | UniParc:UPI0000196C93 |
| InterPro:Znf-RING_LisH | InterPro:Znf_C2H2_type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg |
Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
Coordinates
chr5:+:3261149..3267399
Molecular Weight (calculated)
201373.0 Da
IEP (calculated)
7.505
GRAVY (calculated)
-0.320
Length
1775 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.