Factsheet for AT1G27900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90112	Canola	nucleus	92.29	91.63
CDY11762	Canola	nucleus	92.14	91.62
Bra010915.1-P	Field mustard	nucleus	92.14	91.49
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	40.71	81.66
KRH58751	Soybean	nucleus	76.0	76.33
VIT_01s0010g02780.t01	Wine grape	nucleus	69.71	76.25
Solyc05g015040.2.1	Tomato	nucleus	75.43	75.43
Os11t0310800-01	Rice	nucleus	71.57	70.76
EER87951	Sorghum	nucleus, plastid	70.71	70.21
TraesCS4D01G074200.1	Wheat	nucleus	70.71	70.21
TraesCS4A01G239500.2	Wheat	nucleus	70.57	70.07
TraesCS4B01G075500.1	Wheat	nucleus	70.43	69.93
Zm00001d045147_P015	Maize	nucleus	70.43	69.83
GSMUA_Achr2P20940_001	Banana	nucleus	61.0	63.64
AT2G47250.1	Thale cress	nucleus	39.43	37.86
AT3G62310.1	Thale cress	nucleus	39.0	37.6
AT4G18465.1	Thale cress	nucleus	36.14	36.4
AT1G26370.1	Thale cress	plastid	37.0	36.12
AT4G16680.2	Thale cress	nucleus	40.43	35.55
AT5G14900.1	Thale cress	cytosol	12.86	29.9
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	40.0	26.82
AT1G32490.1	Thale cress	cytosol	39.86	26.72
AT3G26560.1	Thale cress	nucleus	41.57	24.91
AT5G13010.1	Thale cress	nucleus	40.0	22.31
AT2G35920.3	Thale cress	plastid	29.29	19.96
AT2G01130.1	Thale cress	nucleus	31.14	19.59
AT1G33390.2	Thale cress	nucleus	32.14	18.19
AT1G48650.2	Thale cress	nucleus, plastid	31.29	18.16
AT5G04895.1	Thale cress	mitochondrion	29.43	17.74
AT2G30800.1	Thale cress	nucleus	27.86	15.01
AT1G58060.1	Thale cress	nucleus	29.57	14.19
AT1G58050.1	Thale cress	nucleus	27.71	13.69
AT5G10370.1	Thale cress	nucleus	32.57	12.85
AT4G01020.1	Thale cress	nucleus	31.86	12.48
AT1G06670.1	Thale cress	nucleus	26.43	11.74

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:839683	InterPro:AAA+_ATPase	ProteinID:AAG50585.1
ProteinID:AAG51496.1	ProteinID:AEE30889.1	ArrayExpress:AT1G27900	EnsemblPlantsGene:AT1G27900	RefSeq:AT1G27900	TAIR:AT1G27900
RefSeq:AT1G27900-TAIR-G	EnsemblPlants:AT1G27900.1	TAIR:AT1G27900.1	EMBL:AY054692	EMBL:AY128718	Unigene:At.25438
InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0006396	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	RefSeq:NP_564296.1	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
PFAM:PF13401	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF131	UniProt:Q93Y16	SMART:SM00382	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI00000A33D9	SEG:seg	:	:	:

Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]

Coordinates

chr1:-:9715360..9720629

Molecular Weight (calculated)

78374.4 Da

IEP (calculated)

8.125

GRAVY (calculated)

-0.285

Length

700 amino acids

Sequence
(BLAST)

001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.